Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq4987 98.7 1e-15 seq2206 98.7 1e-15 >seq4987 Length=1582 Score = 98.7 bits (108), Expect = 1e-15 Identities = 126/171 (74%), Gaps = 6/171 (4%) Strand=Plus/Minus Query 126099 TTAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAATTTAATGGTCTA 126155 ||| ||||||| ||||||||| | || ||||| | || | | | || || | || Sbjct 811 TTATATTATCCACAAAAACCATTAGTATGTACAAAAGCTACCGAATATTTACAT--TTTA 754 Query 126156 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAAT 126215 || || | || |||||||||||||||||||||||| |||||| || ||||| || Sbjct 753 AA-GATTTACCAGCTGGTATTAATGCAATTGTAGCAATAATGTGTTATACAGGATATAAC 695 Query 126216 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 |||||||||||| | ||| | ||| || | ||||| || | ||||||||| Sbjct 694 CAAGAAGATAGTTTAATTATGAATCAATCGTCTATTGATCGGGGTTTATTT 644 >seq2206 Length=6781 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/166 (74%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 126941 TAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAAT 127000 |||||| |||||||| ||||||| ||||| | | ||||||||||| |||||||||| Sbjct 218 TAAAATATTTATAGGACCAACATTTTATCAAAGGTTAAAACATATGGTAGAAGATAAAAT 277 Query 127001 GCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGTT 127059 ||||| |||||| || | |||| | |||||| | ||||||| ||||| | Sbjct 278 ACATGCCAGAAGTAGAGGGCCTTTAACTATGATTACA-AGACAACCAACAGAAGGTCGAT 336 Query 127060 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 127105 | || |||||| || ||||||| ||||||||| |||||||| Sbjct 337 CAAGAGATGGTGGTCTACGATTTGGTGAAATGGAACGGGATTGTAT 382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658341647530840