Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2267 551 6e-152 seq2873 129 7e-25 >seq2267 Length=4651 Score = 551 bits (610), Expect = 6e-152 Identities = 1154/1707 (68%), Gaps = 54/1707 (3%) Strand=Plus/Plus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||||||||| || |||| | ||||| ||||| || | |||| | |||| || || Sbjct 2006 CTGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTC 2065 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | || ||| | ||| | || | | || ||| ||| | | Sbjct 2066 CCAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACT 2125 Query 47240 TCCTCCgttttctat-aatt-ttgttttttaa-ttcatttgaccaaagttttcgttcagt 47296 ||| || | || |||| |||||| || ||||| || || | | ||| Sbjct 2126 TCCATTGTGAGCAATTAATTGTTGTTTCATATCTTCATCCCACAAACCTCTA---TCAAA 2182 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | ||||||||| |||| ||||| ||| || ||| ||| || Sbjct 2183 AAGATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATAC---ACGTCT 2239 Query 47357 ATAT---ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGT 47413 ||| || ||||||||||||||||| | ||||||||||||||| |||||||| | ||| Sbjct 2240 ATAGTAAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGT 2299 Query 47414 TGATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCT 47472 ||| ||||| ||||| | ||| | || ||| | ||||||| ||||| | | ||| | Sbjct 2300 TGAAGCTGTTGGCATAGGTGCTAA-AAGAAGTGAATTTCTTAATCCATGTATGCTTATTT 2358 Query 47473 NNNNNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCAT 47529 | |||||||||| | | | || | ||||||| | |||| Sbjct 2359 TTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAA 2418 Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589 |||| | ||||||| ||| ||| ||| ||||||| || ||| ||||| | || || Sbjct 2419 ATTGTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTT 2478 Query 47590 TAGCGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTAT 47647 || | |||| || || | ||| || || |||||| ||||| ||||||||| || | Sbjct 2479 GTGCTAATTCAACAGACAT--TTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTT 2536 Query 47648 GTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTG 47706 |||| |||| || ||||| |||||| | ||||| |||||||||| Sbjct 2537 ATTTA-ATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTG 2595 Query 47707 CCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTG 47766 | |||||||| || || || ||||| |||| ||| ||||||| || ||||||||| Sbjct 2596 CTAATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTT 2655 Query 47767 GTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAA 47826 | ||| || | ||| | || |||||||||| || | || Sbjct 2656 TAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAA 2715 Query 47827 TTTCTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTG 47880 | || |||||| ||||||| ||| ||| || || ||| |||||| || | || Sbjct 2716 TATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATG 2775 Query 47881 CTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAG 47940 | || || || | |||||| |||||||| |||| || || |||| ||||||||| Sbjct 2776 CAATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCAC 2835 Query 47941 CACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA---TTNNNNTTGTTAC 47997 ||||| |||| |||||| || || || ||||||| |||||| || ||| | Sbjct 2836 AACATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTG---C 2892 Query 47998 ATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATT 48057 |||| || || || | |||| | ||| |||||||| || ||| || | |||| Sbjct 2893 ATGCATCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAA 2952 Query 48058 TCCAAACA----GTCCTAGC-CTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTT 48112 ||| | | || | || || | | | | || ||| || | ||| ||||| Sbjct 2953 ACCATAAATCTTGTGCAAGGACTGTTTT-----TTTTCCTAAATTTTCTTCTTCATATTT 3007 Query 48113 AGTATATAACTTCTCAAATTCATCCCCATACACATT-ATCTAACCCAGGACATTCATTAG 48171 ||||||||||| |||||||| || || | | ||| | ||| || ||||||||||||| Sbjct 3008 TGTATATAACTTTTCAAATTCGTCTCCCCA-AGATTCACTTAAACCTGGACATTCATTAG 3066 Query 48172 GACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCC 48231 ||||||| || | ||| | | || | ||||||||| ||||||||| ||| |||| || Sbjct 3067 GACACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCC 3126 Query 48232 AAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTT 48291 ||| ||| ||||||||| | || ||||| |||||| || ||| ||| || | | | Sbjct 3127 AAATAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAAT 3186 Query 48292 CAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTC 48351 | | ||| || | ||||| | ||||||||| |||| ||||| ||| | ||| || Sbjct 3187 CTAAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTC 3246 Query 48352 GTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGA 48411 ||| || |||||||||| ||| || || |||| ||| |||| ||||||||||| | Sbjct 3247 TTTTCCCTCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAA 3306 Query 48412 CAATACCATTTGATATACCATTGGTTCCCGAAATATA--ACTTCCACTAGCTCTTATATT 48469 | | |||||||||||||||||| ||||| |||||| | ||| | ||||||||| Sbjct 3307 CTAAACCATTTGATATACCATTAGTTCCTCTAATATAAGAATTC--TGACCTCTTATATC 3364 Query 48470 ACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGT 48529 | | || ||||| || ||||| ||||| || | |||||| |||| | || Sbjct 3365 TTGTACAGCAACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGT 3424 Query 48530 ATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTG 48589 ||| | || ||||| ||| ||| | ||||| ||||||||||||| |||||||| Sbjct 3425 TTCAAATATACCTTCAATAGAATCTGATTTCATAGATAATAGAAAACAAGATGACATTTG 3484 Query 48590 CGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGA 48649 ||| | |||||||||||||||||||| || | ||||| | || |||| | || Sbjct 3485 CGGTCGTGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGA 3544 Query 48650 TAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATAC 48709 | || | ||||||||| | | | || | ||| | ||| || || || || || Sbjct 3545 CATTAAATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACAC 3604 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 | |||||| | || |||||| | ||||| |||||| ||||| ||| || | |||||| Sbjct 3605 TCTCATTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGA 3664 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATA 48796 | ||| || |||||||| |||||||| Sbjct 3665 TCGTTCTAAAGTTTTAAATCCAAAATA 3691 >seq2873 Length=4471 Score = 129 bits (142), Expect = 7e-25 Identities = 325/487 (67%), Gaps = 18/487 (4%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAAT--TCTCTTCATTAGAATTCATTACTCCCATT 18669 |||||||||| || ||||||||| | ||| ||| || | ||| || || Sbjct 3994 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTG--AGCCATAACACCTGAC 4051 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || ||||||||||||||||||||||| |||||||| | ||| ||||| | Sbjct 4052 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 4111 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| ||| |||||||||||| || | | | ||| | ||||| | |||| Sbjct 4112 TCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGT 4171 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| ||||||| ||| | |||||||||| ||||| Sbjct 4172 AATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATTCCAATTAAA 4231 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCT---GATATA 18906 | | |||| | || || |||| | |||| | ||||| ||| |||| Sbjct 4232 TCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATA 4291 Query 18907 ATAGATACAACTCTATCT--TCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATG 18964 | |||||| ||| | ||| | | || | | || | || || || Sbjct 4292 TTTTGAACAACTTCTTCTGGTAATT--TATTTTCTAATAAA---CTATAAATTAAGCAAT 4346 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 ||||||| |||||| || || ||||| || || ||||||||| ||||||||||||| Sbjct 4347 TAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCAT 4406 Query 19025 GCA--TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATAT 19082 | | | | | | |||||| ||||| || || | | ||| |||| ||| ||||| Sbjct 4407 GTAATTTATT--TTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATAT 4464 Query 19083 ACCTTCT 19089 ||||||| Sbjct 4465 ACCTTCT 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562056249853560