Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2873 152 6e-32 >seq2873 Length=4471 Score = 152 bits (168), Expect = 6e-32 Identities = 295/433 (68%), Gaps = 2/433 (0%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || |||||||| ||| |||||| | |||| || |||||||| ||||||| Sbjct 4039 CATAACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTG 4098 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || ||||| ||||| ||| ||||||||| | || | | | || ||| Sbjct 4099 TAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCC 4158 Query 36992 TAATTCCTTC-AGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGT 37050 ||| | ||| || | ||||| ||||||||||| || |||| | |||| ||| | | Sbjct 4159 TAAA-CATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAAT 4217 Query 37051 TTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAG 37110 | || ||||||| | ||| | | || || |||| | | |||| | || | Sbjct 4218 TCATTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTG 4277 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 | |||||||||||||| || ||||||||| | | || || ||| | || | | Sbjct 4278 CTTCTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATAAA 4337 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 ||| || ||||||| ||||| |||||||||||| || || ||||||||| ||| | Sbjct 4338 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 4397 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 |||| || | | | | | |||||||| |||||| ||||| |||| |||| || Sbjct 4398 TTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAA 4457 Query 37291 AGAAAATACCTTC 37303 | || |||||||| Sbjct 4458 ATAATATACCTTC 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592261425783160