Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq3673 122 2e-22 seq2042 84.2 5e-11 >seq3673 Length=8284 Score = 122 bits (134), Expect = 2e-22 Identities = 196/280 (70%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 133907 AAAAATAATCCTGATTCTCGACGTCATATTCTAACTGCATGGAATGTTGGTGAACTAGAT 133966 |||||| ||||| || | |||| |||| | |||||||||||| || ||||| Sbjct 6344 AAAAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGAT 6403 Query 133967 AAAATGACTTTGCCACCATGTCATTGCTTTAGTCAATTCTTCGTAAATGACGGTAAGTTA 134026 ||||| | || || || |||||| || ||||||| | || |||||| || ||| Sbjct 6404 CAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGGAAAATTA 6463 Query 134027 TCATGTATTCTATATCAACGTAGCTGTGATCTATTCTTAGGAGTACCATTCAACATTGCT 134086 ||||||||| | |||||| | |||||| || | || || |||||||| |||||| Sbjct 6464 TCATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAATATTGCT 6523 Query 134087 TCATATTCATTACTAACTCATATGTTAGCACAAGTTTGTGGGTTAGAAGTTGGTGAGTTT 134146 || ||||| || | || ||||| |||||||||| ||| ||| | | | ||| ||| Sbjct 6524 TCCTATTCTATATTTACATATATGATAGCACAAGTATGTAACTTACAGGCAGCTGAATTT 6583 Query 134147 GT--ATGGATGGGTGGAGATGTTCACATTTATAAAAATCA 134184 | ||| || | || ||| ||| ||||||| ||||| Sbjct 6584 ATACATGTATTG--GGTAATGCTCATGTTTATAATAATCA 6621 >seq2042 Length=14245 Score = 84.2 bits (92), Expect = 5e-11 Identities = 176/258 (68%), Gaps = 11/258 (4%) Strand=Plus/Plus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGCACAACGCATC 150457 ||| | || || || || |||||||||||| ||| | ||| ||||| ||| | || Sbjct 9729 TTATTAGGAGACCCTGGAGTTGGTAAAACAGCAATAGCTGAAGGATTGGCAATAAAAATT 9788 Query 150458 GCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATGG 150515 | | || ||||| || |||||| | |||| | |||| | | ||||| ||||| Sbjct 9789 GTACAAGGGGATGTACCTGATTCTTTAAAAG--GAAGAAAATTAGTATCTTTAGATATGT 9846 Query 150516 GTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATTT 150573 | |||| | ||||||| | || ||| | ||||| || |||||| | || | | |||| Sbjct 9847 CTTCATTAATTGCTGGTGCAAAATATAGAGGTGATTTTGAAGAAAGATTAAAATCTATTT 9906 Query 150574 GCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATAC 150630 || ||||| | |||| || | | || || ||||||| ||||| || ||||| Sbjct 9907 --TAAAAGAAATTCAAGATTCAGAAGGACAAGTGGTTATGTTCATAGATGAGATACATAC 9964 Query 150631 TATTATGGGTGCTGGTGC 150648 || | ||||||||||| Sbjct 9965 CGTTGTCGGTGCTGGTGC 9982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147480432508542