Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq4454 154 2e-32 >seq4454 Length=7104 Score = 154 bits (170), Expect = 2e-32 Identities = 481/736 (65%), Gaps = 24/736 (3%) Strand=Plus/Plus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||||| ||| || |||||| | |||||| | || || | |||||||| Sbjct 4852 AATAACAAAATCATTAGGAGTTTTTTGTTGCAACATTAAATATATTGCATATACATAATC 4911 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGC 47913 | | ||||| |||||||| | || || ||||| |||||||| ||||| |||||| ||| Sbjct 4912 TTTTGCATGGCCCCAGTCTCTAAATGTATCAATATTTCCTA-ATATAATAACAGT-TTGA 4969 Query 47914 TTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCA 47973 | || | | ||| | || || ||||||| || || ||||| ||||||||| Sbjct 4970 ATTTTTTTAAATATTTTTGCTATACCTTTTGTAATTTTTTTTGTAACAAATGTTTCACCA 5029 Query 47974 CGTCTTGGAGATTCATGATTAAAAAGAATACCACTACAGGCATACATTCCGTATGATTCA 48033 ||||||||| |||||| ||||| | |||||| || | |||| |||| ||| Sbjct 5030 CGTCTTGGACTTTCATGGTTAAATAATATACCATTAACACAAAACATATTATATGCTTCT 5089 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| | | ||| | |||||| |||||||| ||| |||| Sbjct 5090 CTATAATTTTTTGTTATATTATGACTATATAATTTTGCTGTGCCATAAGGTGAAACTGGA 5149 Query 48094 TAGAAAGGTGTGGTCTC----TGTCTGTGGAGTCTCTTGCA---CCTTACCATAAAGTTC 48146 | || ||||| | || || | ||| || ||| | |||||||| | ||| Sbjct 5150 TTAAATGGTGTATTTTCATTATGACATTGG---CT-TTGAATATTATTACCATATAATTC 5205 Query 48147 ACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTC 48206 || || || | ||| | | ||| | || | || | ||| || Sbjct 5206 TGATGTTGAGGCATTATAAAATTTTA---TATTATTAATTTTTGATAATTTAATTGCTTC 5262 Query 48207 AAGCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAA 48263 | | ||| | || || |||| |||| || | ||||| || || | ||||| Sbjct 5263 TAATATTCTTAATGTACCAATGG---CTGTACATTGTGCTGTATATTCAGGTAATTCAAA 5319 Query 48264 CGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTG 48323 || ||||||||||| ||||| | | |||||| || |||| ||||| | | Sbjct 5320 ACTCACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGA 5379 Query 48324 AATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATC 48383 || | | || ||| || || || || |||||||| || ||||||| ||| Sbjct 5380 TATTAAAGAAAATATATTACTATTATCAAGTAGATCACCATAATGTAAATTTAATTTATC 5439 Query 48384 ATAAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAAC 48443 | | || ||||| ||||| | |||||||| | | | | | | || || ||||| Sbjct 5440 AAATATATGATCTATTCTTTTTGTATTAAATGTACTACATCTCCTAATAACCCCGTGAAC 5499 Query 48444 CTCATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACC 48503 ||||| || || || | ||| ||||| || ||||| |||||||||||||| ||||| Sbjct 5500 TTCATATCCTTTCTCTAAAAGTAGTTCACTCAAATATGATCCATCTTGTCCTGTTATACC 5559 Query 48504 AGTGATTAAAGCAACT 48519 | ||||| |||||| Sbjct 5560 AAATATTAATGCAACT 5575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665432184592280