Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2267 118 1e-21 seq6374 86.0 7e-12 >seq2267 Length=4651 Score = 118 bits (130), Expect = 1e-21 Identities = 443/689 (64%), Gaps = 7/689 (1%) Strand=Plus/Minus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| |||||||||| | || || ||||| || || || ||| ||||| Sbjct 2929 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGCAATTCTAAATCTAATCAAAAA 2870 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||||| |||||||| || | || | || ||||| | || ||||| Sbjct 2869 AATTTAGGAACAATTAAATGTAGTAACTTATGTTGTGAAATAATTGAATACACCTCACCT 2810 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 ||||| |||||||| |||||||| ||||| || | || | ||| || ||| Sbjct 2809 GATGAAGTAGCTGTTTGTAATTTGGCTTCAATTGCATTATGTAAATTTGTTGATAGAGAA 2750 Query 76085 ACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTA 76144 | ||| ||| | ||||| | |||| || || || ||| |||| | |||| || Sbjct 2749 AAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTTA 2690 Query 76145 AACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGA 76204 | | | ||||| ||||||| ||| || || | || ||| || |||| | Sbjct 2689 GATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCTGAAAAATCAAATAAAAGG 2630 Query 76205 CACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTAC 76264 || |||||||||| | || || ||||| | || ||| |||||| | | | || Sbjct 2629 CATCGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATAT 2570 Query 76265 GCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCAC 76324 ||| ||| || || ||||| || || | ||| | || ||||| || |||||| | Sbjct 2569 CCATATGAATCTGACGAAGCTAAAGAATTAAATAAAAGAATATTTGAGACAATGTATTAT 2510 Query 76325 GCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAG 76384 || | | || | | |||||| || ||| || ||| | ||||| ||| | || Sbjct 2509 GCGGCTTTAGAAATGTCTGTTGAATTAGCACAAGTACATGGTCCATATGAATCATATAAG 2450 Query 76385 GGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AGCT 76443 ||| ||| || |||||| | | || |||||||||||| || | ||| | | Sbjct 2449 GGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGTGG-AATGCAAAAGTAGATAA 2391 Query 76444 CAACTAC---GACTGGGATGTTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAACA 76499 || || || |||||| | | || || || ||| | | | || | | || Sbjct 2390 TAAATATTGGGATTGGGATTTATTAAAAAAAAAAAT-AAGCATACATGGATTAAGAAATT 2332 Query 76500 GTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAAT 76559 ||| | | ||||| ||||||||||| || || ||||||| ||||| |||||||||| Sbjct 2331 CACTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTGGGAAATAATGAAT 2272 Query 76560 GCTTTGAACCATACACAACAAACATCTAC 76588 ||||||||||| |||| ||||| ||| Sbjct 2271 CTTTTGAACCATATACAAGTAACATTTAC 2243 >seq6374 Length=1478 Score = 86.0 bits (94), Expect = 7e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 13811 CAAGATGTTTCTGAACTTCGCTATGGTCGTCTTATGATTATGACAGATGCCGATAATGAT 13870 |||||| || | |||| | |||||| | | ||||||||||| ||| ||| ||||| Sbjct 959 CAAGATATTAAAGGACTTAGATATGGTTCTTTAATGATTATGACGGATCAGGATTATGAT 1018 Query 13871 GGTTCTCACATCAAGGGTCTCATCCTAAATATGATCCACTACTTCTGGCCCAGTCTT 13927 || ||||||||||||||| | | | |||||||| || | || |||||||||||| Sbjct 1019 GGATCTCACATCAAGGGTTTATTAATTAATATGATTCATAAATTTTGGCCCAGTCTT 1075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596513828199520