Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2873 149 9e-31 >seq2873 Length=4471 Score = 149 bits (164), Expect = 9e-31 Identities = 292/425 (69%), Gaps = 10/425 (2%) Strand=Plus/Plus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| || ||| | ||| |||| || ||||||||||| ||||||| || ||||||||| Sbjct 4052 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 4111 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | ||| ||| ||||||||| | | | | || ||| ||| | || | Sbjct 4112 TCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGT 4171 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTAG 18042 |||||||| || |||||||| | |||||| ||||| || || ||||||| || | || Sbjct 4172 AATCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 4230 Query 18043 TCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTAT 18102 | |||| || ||| ||||||| | |||||| ||||| | ||||| | ||| Sbjct 4231 ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTAT 4290 Query 18103 GTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAA--TAAACAC 18160 ||| || || ||| |||||||| || | | || | ||||| ||| || Sbjct 4291 ATTTTGAACAACTTCTTCTGGTAATTTATT--TTCT---AATAAACTATAAATTAAGCAA 4345 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||||||| |||| ||||||||||||| |||||||| |||||||| ||||| || Sbjct 4346 TTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCA 4405 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 | | | || | |||||| | |||||| || | ||||| | | ||| |||||| Sbjct 4406 TGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATA 4465 Query 18281 CCCTC 18285 || || Sbjct 4466 CCTTC 4470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731803579116400