Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2873 165 2e-35 seq4931 116 7e-21 seq3517 84.2 4e-11 >seq2873 Length=4471 Score = 165 bits (182), Expect = 2e-35 Identities = 270/382 (71%), Gaps = 9/382 (2%) Strand=Plus/Plus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||||| ||| ||| |||||||||||| | || | || | ||| Sbjct 4095 CTTGTAAAGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAA-ACTTTAGAA 4153 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | |||| || ||||||||| || |||||||||| |||||| ||||| | | Sbjct 4154 CACCCTAAACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTT 4213 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | ||||||| | ||| ||||||| | | |||| ||| Sbjct 4214 GAATTCATTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCA 4273 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || ||||| | Sbjct 4274 ACTGCTTCTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT- 4332 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| ||||| || |||||||||||||| ||| || || || || |||||||| Sbjct 4333 ---ATAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATT 4389 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| |||||| |||| ||||| Sbjct 4390 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAAC 4448 Query 49930 TACTAGAAAAGAATATACCCTC 49951 | | | ||| |||||||| || Sbjct 4449 TTCCACTAAATAATATACCTTC 4470 >seq4931 Length=1290 Score = 116 bits (128), Expect = 7e-21 Identities = 124/161 (77%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 192381 ATCATCCAATTGTTTACCAGCAAAGA-TTAATCTCTGTT-GATCAGGTGGTATTCCTTCT 192438 ||| || |||||||| |||||||| | ||| | | |||| | ||||| || ||||||| | Sbjct 1290 ATCTTCTAATTGTTTTCCAGCAAAAAATTAGTTTTTGTTTGGTCAGGGGGAATTCCTTTT 1231 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 |||||||| ||||| ||| ||||| |||| ||| || | ||| || || ||||| Sbjct 1230 TTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTG 1171 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| || ||||||||||| | ||| || |||||||| Sbjct 1170 ATTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1130 >seq3517 Length=4332 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 1990 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 1932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984385662511650