Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq2873 197 2e-45 seq4931 123 5e-23 seq3517 84.2 4e-11 >seq2873 Length=4471 Score = 197 bits (218), Expect = 2e-45 Identities = 303/425 (71%), Gaps = 9/425 (2%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || || | |||| ||||||| || || ||||||||||||| ||| ||||||||| Sbjct 4052 TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAA 4111 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TATAA 38950 | ||| ||| |||||||||||| | || | || | ||| | | | ||| | || Sbjct 4112 TCCATCCAATTAAATGGATTTTTAGAATGA-AAAACTTTAGAACACCCTAAACATTCTAG 4170 Query 38951 TAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATAA 39010 ||||||||| || |||||||||| |||||| |||| | | ||||||| || | ||| Sbjct 4171 TAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATTCCAATTAA 4230 Query 39011 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 39070 | | ||||||| | ||| ||||||| | | |||| ||| || |||| ||||| ||| Sbjct 4231 ATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTAT 4290 Query 39071 cataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACATG 39129 | | | | || || |||||||| || ||||| | ||| | ||| || Sbjct 4291 ATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACT----ATAAATTAAGCAAT 4346 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC-T 39188 |||||| ||||||| |||||| || || || |||||||||||||| ||||| || | Sbjct 4347 TAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCAT 4406 Query 39189 GGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATA 39248 | ||| || | | ||||||| |||||| |||| |||||| | | ||| |||||| Sbjct 4407 GTAATTTATTTTGT-TTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATA 4465 Query 39249 CCCTC 39253 || || Sbjct 4466 CCTTC 4470 >seq4931 Length=1290 Score = 123 bits (136), Expect = 5e-23 Identities = 125/160 (78%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAA-TTAATCTCTGTT-GGTCAGGTGGTATTCCTTCTT 171972 || || |||||||| |||||||||| ||| | | |||| ||||||| || ||||||| || Sbjct 1289 TCTTCTAATTGTTTTCCAGCAAAAAATTAGTTTTTGTTTGGTCAGGGGGAATTCCTTTTT 1230 Query 171973 TATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAA 172032 ||||||| ||||| ||| ||||| |||||||| || | ||| || || ||||| | Sbjct 1229 TATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGA 1170 Query 172033 TGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||||| || ||||||||||| | || || |||||||| Sbjct 1169 TTGTTTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1130 >seq3517 Length=4332 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 1990 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 1932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905051381098200