Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2267 251 2e-61 seq3976 127 6e-24 seq1451 96.9 1e-14 >seq2267 Length=4651 Score = 251 bits (278), Expect = 2e-61 Identities = 802/1227 (65%), Gaps = 40/1227 (3%) Strand=Plus/Plus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||||||| |||| ||||||||||| || |||||| | | |||||| || | Sbjct 2497 TTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAGCTTCGT 2556 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 2557 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 2611 Query 155426 AATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT----CTTCTTGT-TTGGGTAA 155480 || || | || |||||||| | ||| || || | |||||| |||||||| Sbjct 2612 TATTCCAATAGGTCGATGCCTTTTATT-----TGATTTTTCAGCTTCTTTAATTGGGTAA 2666 Query 155481 AAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAAT 155540 |||| |||||||| |||| ||||||| || | | || || | || |||| Sbjct 2667 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAAT 2726 Query 155541 TTCACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCC 155597 || | | | |||| |||| | ||| || ||||| ||| | |||| || ||| Sbjct 2727 TTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCC 2786 Query 155598 AGATTACATACCGCAGTCTCCTTGTCGTC-GCTGTATTCTACAATCTCACAGCACAGGTT 155656 | |||||| || || || | | || | ||||||| | || ||||| || | ||| Sbjct 2787 AAATTACAAACAGCTA-CTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATAAGTT 2845 Query 155657 AGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTA 155716 | || || || || |||||||| || || ||||||||| || || ||||| || || Sbjct 2846 ACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATA 2905 Query 155717 TAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACG 155776 || || ||||| || || || || || | | || | ||| | || | Sbjct 2906 TAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTG 2965 Query 155777 GGCATTAATTTGCTTGTTGT----ATCTGCCTTCCGACTCATATTTCATATACAGCGTTC 155832 ||| | | | || || | | | |||| |||||||| |||| | | || Sbjct 2966 TGCAAGGACT-GTTTTTTTTCCTAAATTTTCTTCT---TCATATTTTGTATATAACTTTT 3021 Query 155833 GGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACC 155892 | || || || || | ||||| | || || || | || || || | | | || Sbjct 3022 CAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCC 3081 Query 155893 AAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAA 155952 | ||||||| | |||| | | |||||||| |||| ||||||||||||| || | Sbjct 3082 AGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATA 3141 Query 155953 GGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAA 156012 || | || || | || || | || ||||| || | || ||||| ||||| || Sbjct 3142 AATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAA 3201 Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCT 156069 |||| | ||| |||||| | ||| | |||||| || || || || || ||| | Sbjct 3202 TATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTT 3261 Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129 |||||||||||| || || | ||| || || | || ||| |||| | |||||| || Sbjct 3262 GATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGATA 3321 Query 156130 TGCCATTGGTTCCGCGAATATGCGAAC-CAGATGAGCGAACATTATGAATATGTAGTCCA 156188 | ||||| ||||| | ||||| ||| | || | | || || | | | ||| Sbjct 3322 TACCATTAGTTCCTCTAATATAAGAATTCTGACCT-CTTATATCTTGTACAGCAACTCCT 3380 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 || || |||| |||| ||| ||| |||| |||| || | || ||||||||| Sbjct 3381 ATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTTCA 3440 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 |||||||| || ||| |||| |||| | || || | ||| |||||||| ||||| Sbjct 3441 ATAGAATCTGATTTCATAGATAATAGAAAACAAGATGACATTTGCGGTCGTGGGGTTCCT 3500 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTC 156368 | || |||| ||| ||||| ||||| | ||||| || | |||||| ||| ||||| Sbjct 3501 GAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATATGT- 3559 Query 156369 TCCTTAATC-TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATG 156427 | || || | || ||||||| | ||||| | || || || ||||| | | ||| Sbjct 3560 TTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAATG 3619 Query 156428 CTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTT 156487 |||||||| || | ||| || |||||| | | |||| ||||| | |||||| Sbjct 3620 TTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTTTT 3679 Query 156488 AAACCCGAAATAATCAAACAGAAAATC 156514 ||| || ||||||||| | |||||| Sbjct 3680 AAATCCAAAATAATCATAATTAAAATC 3706 >seq3976 Length=1945 Score = 127 bits (140), Expect = 6e-24 Identities = 174/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 289110 TGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTAC 289169 ||| || | ||||||| |||||||| ||||||| ||| | ||| |||| || || | ||| Sbjct 1921 TGCACCCACACCAACAAACATTTCTTCAAATTCTGAACCAGATGCTTGGATAAAAGGTAC 1862 Query 289170 ATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTC 289229 ||||||||| ||||| | ||||| || | | ||| || |||||||||||| ||| Sbjct 1861 ATTTGCTTCTCCTGCAATAGCCCTAGCAATTAATGTTTTTCCTGTTCCAGGTTCACCCGA 1802 Query 289230 TAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAA 289289 ||||| | || || || | |||||| ||| || |||| || | | ||||| Sbjct 1801 TAATAATATACCTTTGGGCAATTTTGCACCAATTTTAGTAAATTTATCTGAATTTTTTAA 1742 Query 289290 AAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 | | || | ||||| | |||||| | |||| | || ||||| ||| |||||| || || Sbjct 1741 ATAATCAATTATTTCTTGAAGTTCTTGTTTTACTTCGTCACACCCTTTTACATCTGCTAA 1682 Query 289350 AGT 289352 ||| Sbjct 1681 AGT 1679 >seq1451 Length=6220 Score = 96.9 bits (106), Expect = 1e-14 Identities = 316/480 (66%), Gaps = 12/480 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || || || |||||| ||| |||||| || Sbjct 1370 CTATCAAATCTTCCTGGTCTTGTAATAGCAGGATCAAA-ATATCGATTCTATTTGTTCCT 1312 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || | || || | Sbjct 1311 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCTACAAGCATCT 1254 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 | || || || | ||| |||||||||||| || | || | ||| | | | || | Sbjct 1253 GGTTTAGAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCCTTTGATC-TC 1195 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| | ||||||||||| ||||| || || ||||| | | | || | || || ||| || Sbjct 1194 TTTCTCCCAACAGCATCTATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 1135 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||||||||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 1134 TGAGAAAATAATTCTCGGACTCTTGATGGTCCTATTCCTACAAATACTTCAATAAAATCA 1075 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | | || || | ||||| ||||| || || || || | || | | | Sbjct 1074 CTTCCACTAATATTAAAAAAAGGAACATTAGCTTCTCCAGCAACAGCTTTTGCTAATAAT 1015 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || ||||| |||| || ||||| | || ||||||| |||||| || | Sbjct 1014 GTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-TAA 956 Query 289264 GACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 |||| |||||| | || | || ||||| || |||| |||| || ||| | |||||| Sbjct 955 TACTTGATATTTTGCTGGATTTTTCAAAAAGTCAACAAATTCCATAATTTCTTCTTTTGC 896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471676563538423