Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_021806.1 Length=100418 Score E Sequences producing significant alignments: (Bits) Value seq3029 82.4 5e-11 >seq3029 Length=6295 Score = 82.4 bits (90), Expect = 5e-11 Identities = 176/261 (67%), Gaps = 8/261 (3%) Strand=Plus/Minus Query 96124 TCTATAGCTTTAAAGCCTTCTTCTAGAATTTTCTGAGCTAATACTGTAGCTGTGGTTGTT 96183 |||| |||||| | |||| || | ||| ||||||| | ||||||||| |||||| Sbjct 1850 TCTACTGCTTTACATCCTTGTTGAAAAATAGAACGAGCTAAAATTGTAGCTGTTGTTGTT 1791 Query 96184 CCATCTCCTACTTCTGTATTAGTATTCTCAGCTACTTGTTTAATCATTTGAGCACCTAAG 96243 ||||| ||| ||| ||| ||||| | || ||||| |||| ||| || || || | Sbjct 1790 CCATCACCTGCTTTATCATTTGTATTTGCTGCAACTTGCTTAACCATCTGTGCTCCGAGA 1731 Query 96244 TTTTCAAATGGATCTTCTAAATGAATTTCTCTAGCCACACTTACACCATCTTTAGTAATG 96303 ||| | ||| | | || | ||| | |||| || ||||||||||||| || || Sbjct 1730 TTTGCTAATTTTTTATTAAATTCAATACTTTTAGCAACTGTTACACCATCTTTTGTTATT 1671 Query 96304 ATTG--GATTATACTGGT--CTAAACCTAGTATAACATTCTTACCTGATGGTCCTAGAGT 96359 | | ||| | || | || ||| ||| ||||| | ||| ||||||| || Sbjct 1670 TTGGGCGATCCAAATGATTGCT----CTATTATTACATTTCTTCCTTTGGGTCCTAATGT 1615 Query 96360 TACTTTAACTGCATTAGCTAA 96380 ||| ||||||||| ||||| Sbjct 1614 TACACTAACTGCATCTGCTAA 1594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 321183521352901