Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq3673 111 2e-19 seq2835 96.9 5e-15 seq2206 95.1 2e-14 seq4987 93.3 6e-14 >seq3673 Length=8284 Score = 111 bits (122), Expect = 2e-19 Identities = 429/657 (65%), Gaps = 29/657 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| |||||| |||| ||| | ||| | | |||||||||||| || ||||||| | Sbjct 6031 AATTTAATTTAAATGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTATAAGA 6086 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAAT---TTGTTA 180472 |||| | |||||||||| ||| | || | ||| ||||||| ||| |||||| Sbjct 6087 GGTATTATCGAAGAATTATTGTGGTTTATAAGAGGGGAAACAAATGGAAATACTTTGTTA 6146 Query 180473 AATGATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGT 180532 | | | | | | | | ||| | | |||||| | | | ||||||||| Sbjct 6147 GAAAAAAACG---TAAGAATATGGGAAGCTAATGGAACAAGGGAATTTTTAGATAAA--- 6200 Query 180533 GGATTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGAC 180590 | | | |||| | || ||| |||| | || ||||||||||||||||||||||| | Sbjct 6201 GAAAATTATTTCATAGAGAAGTTAATGATCTCGGTCCAATTTATGGATTTCAATGGAGGC 6260 Query 180591 ATGCAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAA 180649 || || ||| |||||| || | || || || |||| | |||| | || ||| Sbjct 6261 ATTTTGGTGCTGAATATACAGA-TATGCATGATAATTATAAAGACAAAGGAGTTGATCAA 6319 Query 180650 TTAAGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGAT 180709 |||| | ||||| | || |||||| |||| || || |||| || | | Sbjct 6320 TTAAAAAATATTATAAATTTAATTAAAAATGATCCTACTTGTAGACGAATTATTTTGTGT 6379 Query 180710 AGTTGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAA 180769 ||||||||| | | ||| | ||||| | || || ||||| ||| ||| Sbjct 6380 GCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAA 6439 Query 180770 TTTTATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATT 180827 ||||||| || || |||||| | ||| |||||||||||||| |||| Sbjct 6440 TTTTATGTTTTTGACGGAAAATTATCATGTATT-----ATGTATCAAAGATCTTGTGATT 6494 Query 180828 TAGGATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTC 180885 |||| | || || |||| |||||||||| |||||| || ||| ||| || | | | Sbjct 6495 TAGGGCTTGGGGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC 6554 Query 180886 AAAGTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATA 180945 |||| || || ||| | | ||||||| || || || ||| |||||| || Sbjct 6555 -AAGT-ATGTAACTTACAGGCAGCTGAATTTATACATGTATTGGGTAATGCTCATGTTTA 6612 Query 180946 TTCTAACCATATTGACCAATTAAAAATTCAATTAAGCAGAAACCCTTACAAGTTTCC 181002 | ||| |||||||| ||||| ||||| |||| |||| |||||| ||||| Sbjct 6613 TAATAATCATATTGAAAGCTTAAAGATTCAGTTAAATAGAACTCCTTACCCTTTTCC 6669 >seq2835 Length=4028 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| |||||||| | ||||| ||||||||||| | || ||| | ||||| || Sbjct 3064 TAAAGTTGCTCAACTTGTAGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAGTC 3123 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||||||||||| Sbjct 3124 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 3183 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || | |||||| || || ||||||| |||| ||||| ||||||||| || | || Sbjct 3184 TTTTTTAGAACCATGCGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 3243 Query 173068 ATCAAGGTATATTTATACTAAAC-CGCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | || ||||| | ||| |||| |||| | || || |||||||| ||| | | Sbjct 3244 AGCTAGATATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 3302 Query 173127 ATGACCCTATTTTAA 173141 |||| || ||||||| Sbjct 3303 ATGATCCGATTTTAA 3317 >seq2206 Length=6781 Score = 95.1 bits (104), Expect = 2e-14 Identities = 122/166 (73%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 218 TAAAATATTTATAGGACCAACATTTTATCAAAGGTTAAAACATATGGTAGAAGATAAAAT 277 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| ||||| | Sbjct 278 ACATGCCAGAAGTAGAGGGCCTTTAACTATGATTACA-AGACAACCAACAGAAGGTCGAT 336 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| || ||||||| ||||||||| |||||||| Sbjct 337 CAAGAGATGGTGGTCTACGATTTGGTGAAATGGAACGGGATTGTAT 382 >seq4987 Length=1582 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 201146 TGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAATCAAGAAGATAGTGT 201205 |||||||||||||||||||||||| ||||| || ||||| || |||||||||||| | Sbjct 740 TGGTATTAATGCAATTGTAGCAATAATGTGTTATACAGGATATAACCAAGAAGATAGTTT 681 Query 201206 TATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 ||| | ||| || | |||||||| | |||||||| Sbjct 680 AATTATGAATCAATCGTCTATTGATCGGGGTTTATT 645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655218739511000