Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq4987 120 4e-22 seq2835 105 8e-18 seq1355 87.8 2e-12 >seq4987 Length=1582 Score = 120 bits (132), Expect = 4e-22 Identities = 158/216 (73%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 192493 CTCATACATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTA 192549 ||||| |||| ||||||||||||||||| | || ||| | || || | || ||||| Sbjct 819 CTCATTTATTATATTATCCACAAAAACCATTAGTATGTACAAAAGCTACCG-AATATTTA 761 Query 192550 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 192609 | || | |||| ||| |||||||||||| ||||| || ||| || ||||| | Sbjct 760 C--ATTTTAAAGATTTACCAGCTGGTATTAATGCAATTGTAGCAATAATGTGTTATACAG 703 Query 192610 GCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTG 192669 | |||||||||||||| ||| | ||| | ||| || | |||||||| | || |||||| Sbjct 702 GATATAACCAAGAAGATAGTTTAATTATGAATCAATCGTCTATTGATCGGGGTTTATTTA 643 Query 192670 GCACTATAACTTATAATACATATACAGTTGAAGAAA 192705 | | | || |||| ||||||||| |||||||| Sbjct 642 GAAGTGTATTTTATCGTACATATACGAGTGAAGAAA 607 >seq2835 Length=4028 Score = 105 bits (116), Expect = 8e-18 Identities = 181/260 (70%), Gaps = 2/260 (1%) Strand=Plus/Plus Query 165162 TAAAGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAACATGGTGAACA 165221 ||||||||||||| | || ||| |||||||||| | | ||| | ||||| || Sbjct 3064 TAAAGTTGCTCAACTTGTAGGTTATATTGCAGAACATAGTGCATATCATCATGGAGAGTC 3123 Query 165222 AAATTTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 165281 | ||| ||||||| || || | || ||| ||||||||| ||||||| ||| Sbjct 3124 ATCATTACAACAAACTATTATAAATATGGCTCAAACATTTGTTGGTTCAAATAACATAAA 3183 Query 165282 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGATTCTGCGGC 165341 || | ||||| || |||||||||| ||| |||||| ||||||||| | | || Sbjct 3184 TTTTTTAGAACCATGCGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGC 3243 Query 165342 ATCAAGATATATTTATACCAAAC-CACATAAAATATTAAAATATATATTTAGAGAAGAAG 165400 | | |||||||| | ||| |||| ||| | | || || |||||||| ||| | | Sbjct 3244 AGCTAGATATATATTTACAAAACTTGCATCATCCACTAGAA-GTATATTTAATGAATATG 3302 Query 165401 ATGACCCTATTTTAAATTAT 165420 |||| || |||||||| ||| Sbjct 3303 ATGATCCGATTTTAAAATAT 3322 >seq1355 Length=14656 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 50419 AATTTAGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTACAT 50478 ||||||||| | ||| | |||||||||||||||||||||| ||||||||||| |||||| Sbjct 2659 AATTTAGCTGTAACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACTTACAT 2718 Query 50479 GTTCCTCAATCATATG 50494 | |||||||| ||| Sbjct 2719 TTAGCTCAATCACATG 2734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628472440189440