Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2267 298 1e-75 seq3673 127 5e-24 seq5033 105 2e-17 seq1355 105 2e-17 >seq2267 Length=4651 Score = 298 bits (330), Expect = 1e-75 Identities = 620/913 (68%), Gaps = 29/913 (3%) Strand=Plus/Minus Query 110263 TAAATAATATTATCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTC 110322 ||||||| || |||||||| | || | | || ||| |||||||| || |||||| Sbjct 3732 TAAATAAAGAAATAGATTATACAAGGGATTTTAATTATGATTATTTTGGATTTAAAACTT 3673 Query 110323 TTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGT 110382 | ||||| | |||||| | || | ||| | || ||||||||||||||||| | | Sbjct 3672 TAGAACGATCATATTTATTACGAATTAATAATAAAATTATTGAACGTCCTCAACATTTAT 3613 Query 110383 TTCTTCGTGTTGCGATTGGTATTCATGGACATGATATT---AAAGCTGTTATTGAATGTT 110439 | | | || | ||||| |||||| | ||||| || |||||| ||| ||| | Sbjct 3612 TAATGAGAGTGTCAATTGGAATTCATATAGATGATCTTGAAAAAGCT-TTA--GAAACAT 3556 Query 110440 ATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAA 110499 || || || | | |||| | | |||||||| || || ||||||| |||||| Sbjct 3555 ATCATTTAATGTCTCAAAAATATTTCACACATGCTACACCCACATTATTTAATTCAGGAA 3496 Query 110500 CTAATGGAGGACAATTGGCTTCTTGCTTTCT----TCTAGGAATTAACGATGATTCTATT 110555 | || ||| || | ||||| ||||| |||| ||| | | ||||||||| Sbjct 3495 CCCCACGACCGCAAATGTCATCTTGTTTTCTATTATCTATGAAATCA----GATTCTATT 3440 Query 110556 GAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATT 110615 |||||||| | ||| | | ||| || |||| | ||| ||||| | || || || Sbjct 3439 GAAGGTATATTTGAAACATTAAAACAATGTGCTTTGATTAGTAAAACAGCAGGCGGCATA 3380 Query 110616 GGTATTCACGTTCATGATATTCGC--TCAAAAGGAGCAAATATCGCAACAGCGAAGGGTG 110673 || || || || ||||| | ||| || | |||| | | | || ||| Sbjct 3379 GGAGTTGCTGTACAAGATATAAGAGGTCAGAATT--CTTATATTAGAGGAACTAATGGTA 3322 Query 110674 CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATC 110733 |||| ||| | |||||||||||||| || || || || || |||| ||||| ||| Sbjct 3321 TATCAAATGGTTTAGTTCCAATGTTAAGGGTTTTTAATGATACGGCAAGGTATGTAGATC 3262 Query 110734 AAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATA 110790 ||||||| || ||||| || || ||||| | ||| | || || ||||||||||||| Sbjct 3261 AAGGTGGAGGGAAAAGAAAAGGATCTTTTGCAGTATATATAGAGCCATGGCATTCAGATA 3202 Query 110791 TATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATT 110850 | |||||||| ||||| | | |||||||| || |||||| |||||| || |||| Sbjct 3201 TTTTTGAATTTTTAGATTTAAGAAAAAATCATGGTAAAGAAGAATTAAGAGCTCGAGATT 3142 Query 110851 TATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGT 110910 |||||||||| || ||| | | |||||||| |||||| | || |||||||| | | Sbjct 3141 TATTTTATGCTATTTGGGTACCTGATTTATTTATGAAAAGAGTAAAAGAAAATAAAAACT 3082 Query 110911 GGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTG 110970 || || | ||||||||| || | ||| ||| || ||| | ||| | || |||| Sbjct 3081 GGACTTTAATGTGTCCTAATGAATGTCCAGGTTTAAGTGAATCTTGGGGAGACGAATTTG 3022 Query 110971 AAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAA---TTCCAGCTC 111027 || | | || |||||||||| ||||| || || | ||| ||| | | || | Sbjct 3021 AAAAGTTATATACAAAATATGAAGAAGAA---AATTTAGGAAAAAAAACAGTCCTTGCAC 2965 Query 111028 AAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGT 111087 |||| | ||||| || | || ||| |||||||||| || ||||| || | Sbjct 2964 AAGATTTATGGTTTGCTATATTACAAAGTCAAATTGAAACTGGTGTACCATATATGTTAT 2905 Query 111088 ATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGT 111146 |||||||| ||| ||| ||||||||||||| ||||||||||||||||| | |||| Sbjct 2904 ATAAAGATGCAT-GCAATTCTAAATCTAATCAAAAAAATTTAGGAACAATTAAATGTAGT 2846 Query 111147 AATTTGTGCTGTG 111159 || || || |||| Sbjct 2845 AACTTATGTTGTG 2833 Score = 113 bits (124), Expect = 1e-19 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || || |||||| || Sbjct 2713 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTACCCAATTAAA 2654 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || | || ||||| | |||| |||| ||||| || || |||||||||||||| Sbjct 2653 GAAGCTGAAAAATCAAATAAAAGGCATCGACCTATTGGAATAGGAGTACAAGGATTAGCA 2594 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| |||||| |||||| |||||| || Sbjct 2593 GATACATTTATGCTTTTAAGATATCCATATGAATCTGACGAAGCTAAAGAATTAAATAAA 2534 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | || || || ||||| |||| || ||| Sbjct 2533 AGAATATTTGAGACAATGTATTATGCGGCT 2504 >seq3673 Length=8284 Score = 127 bits (140), Expect = 5e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| ||| | ||| ||||| Sbjct 6447 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 6388 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | || ||| ||||||||||| | | | | | Sbjct 6387 TTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATA 6328 Query 59057 TGTTTTATTTGGTCAAATCCATT 59079 | ||||| ||| |||| ||| || Sbjct 6327 TTTTTTAATTGATCAACTCCTTT 6305 >seq5033 Length=4696 Score = 105 bits (116), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| || ||||| | ||| |||||||| ||| |||||||| ||| Sbjct 2966 TTTAATAGACAGCCATCTTTACATCGTATGTCTATTATGTGTCATAAAGCTCGAGT---- 2911 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| ||||| ||||||||||| ||||| Sbjct 2910 TATGGATTATAAAACATTTCGTTTTAATGAATGTGTTTGTAGCCCTTATAATGCAGATTT 2851 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||| || || ||||||||| |||||||||||||| Sbjct 2850 TGACGGGGACGAAATGAATTTGCATGTACCTCAA 2817 >seq1355 Length=14656 Score = 105 bits (116), Expect = 2e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | ||||||||| | ||||||||| Sbjct 2548 AGACATATGACTGATGAAGATTACATATTATTTAATCGACAACCATCATTACATAAAATG 2607 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| || |||| ||| |||| || | |||||||| |||||| || | Sbjct 2608 AGTATTATGGGACACAAAGCTAAAATATTGCCTTATTCTACATTTCGTTTAAATTTAGCT 2667 Query 305426 GCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 | | | || |||||||| ||||||||||| ||||||||||| | ||| || ||||| Sbjct 2668 GTAACTTCACCATATAATGCTGATTTTGATGGTGATGAAATGAACTTACATTTAGCTCAA 2727 Query 305486 TCA 305488 ||| Sbjct 2728 TCA 2730 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | ||||| ||| Sbjct 3848 ATAGATCATTACCACATTTTATCAAATTTGATTATGGGCCAGAAAGTAGAGGATTTGTAT 3907 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 | | ||| |||||| || || | || ||| || |||||||| || | || Sbjct 3908 CGAATTCTTATTTAAGT--GGGTTAACACCACAAGAAGTTTTTTTTCATGCTATGGGAGG 3965 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| || || | ||||||| | ||||||| Sbjct 3966 TAGAGAAGGTATTATTGATACTGCTTGTAAAACTTCAGAAACTGGTTATATACAAAGAAG 4025 Query 306427 ATTAATGAAAACGCTTGAAGAT 306448 |||||| ||| | | |||||| Sbjct 4026 ATTAATTAAAGCTATGGAAGAT 4047 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186699074034319