Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_026242.1 Length=145704 Score E Sequences producing significant alignments: (Bits) Value seq6473 98.7 9e-16 seq4139 98.7 9e-16 seq2552 84.2 2e-11 >seq6473 Length=2211 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 39762 ATAACGTAACTATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAA 39821 |||| ||| || | ||||| ||||||||||||||||| || ||| ||||||||||| | Sbjct 1187 ATAATATAAATAATAAGCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGGA 1128 Query 39822 GGTCCCGGGTTCAATCCCCGGTGCCCGTATTT 39853 | ||||| |||| |||| |||||||||||||| Sbjct 1127 GATCCCGAGTTCGATCCTCGGTGCCCGTATTT 1096 >seq4139 Length=9940 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 39762 ATAACGTAACTATCAGGCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAA 39821 |||| ||| || | ||||| ||||||||||||||||| || ||| ||||||||||| | Sbjct 301 ATAATATAAATAATAAGCGGGCATGGTCTAGTGGTTATGACGCCTGCTTTACACGCAGGA 360 Query 39822 GGTCCCGGGTTCAATCCCCGGTGCCCGTATTT 39853 | ||||| |||| |||| |||||||||||||| Sbjct 361 GATCCCGAGTTCGATCCTCGGTGCCCGTATTT 392 >seq2552 Length=6332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 39778 GCGGGTATGGTCTAGTGGTTATGGCGTCTGTTTTACACGCAGAAGGTCCCGGGTTCAATC 39837 ||||| |||||||||||| |||| || ||| | |||||||| || ||||| |||| ||| Sbjct 4938 GCGGGCATGGTCTAGTGGCTATGACGCCTGCCTAACACGCAGGAGATCCCGAGTTCGATC 4879 Query 39838 CCCGGTGCCCGTATTT 39853 | |||||||||||||| Sbjct 4878 CTCGGTGCCCGTATTT 4863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466081223157760