Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq4931 95.1 1e-14 seq2267 86.0 6e-12 >seq4931 Length=1290 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 25159 TTTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGAT 25218 |||| ||| | || |||||| | |||||||||||||||||||||||| | ||||| | Sbjct 1117 TTTTACATTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCT 1176 Query 25219 CGAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGG 25278 || || ||| | ||||||||| || | || ||| ||||||| |||||| | || Sbjct 1177 TGATGTTGAACCATCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAAAAGG 1236 Query 25279 TATACCGCCCGATC-AGCAAAGACTCATTTACGGC-GGCAAACAACTCGAAGAT 25330 || || || || | | |||| ||| |||| || || |||||| | |||||| Sbjct 1237 AATTCCCCCTGACCAAACAAAAACTAATTTTTTGCTGGAAAACAATTAGAAGAT 1290 >seq2267 Length=4651 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/228 (70%), Gaps = 9/228 (4%) Strand=Plus/Plus Query 137822 TTAGACCCGGACACTCGTCGGGACACATCAACGACCA--TTTTCCTCCCGTCCTAACCCT 137879 ||| ||| ||||| || | |||||||| || | ||| |||| | | | | || || Sbjct 3046 TTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTTTTTATTTTCTT--TTACTCT 3103 Query 137880 TTCCATGAACAGAGAAGGCGTCCATATAGCAAAAAGAAGGTCGCGAGC-CTTCATATCTT 137938 || ||| || | | ||| ||| |||||| ||| | || ||||| ||| || |||| Sbjct 3104 TTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCGAGCTCTTAAT-TCTT 3162 Query 137939 CGGCGCCCATATTGCGTTTTAAATCCaaaaaagtaaaaaTATCAGCATGCCAAGGCTCGA 137998 | || ||| | ||||||| ||||| ||||||||| | |||||| ||||| | Sbjct 3163 CTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGCTCTA 3222 Query 137999 TATAGACGGCCATAGCTCCTTTTCTTTT---ACCGCCTTGATCCACAT 138043 |||| || || | || |||||||||||| || |||||||| |||| Sbjct 3223 TATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTTGATCTACAT 3270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445052789237280