Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq4454 109 8e-19 >seq4454 Length=7104 Score = 109 bits (120), Expect = 8e-19 Identities = 191/278 (69%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 || ||||| | ||||||||| || || |||||||| ||| | |||||| || | || Sbjct 5571 GCATTAATATTTGGTATAACAGGACAAGATGGATCATATTTGAGTGAACTACTTTTAGAG 5512 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATC 161083 || || |||||||| || || ||||| | ||| | ||||||||| |||||| Sbjct 5511 AAAGGATATGAAGTTCACGGGGTTATTAGGAGATGTAGTACATTTAATACAAAAAGAATA 5452 Query 161084 GATCATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATA 161143 |||||||| || ||| | ||| | | || || || ||| | ||| || ||| Sbjct 5451 GATCATATATTTGATAAATTAAATTTACATTATGGTGATCTACTTGATAATAGTAATATA 5392 Query 161144 GTCTCTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCAT 161203 | ||| | || || || |||| |||| || || || ||| ||||| |||||| Sbjct 5391 TTTTCTTTAATATCTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTCAT 5332 Query 161204 GTGAAAGTATCTTTCGAGGAACCTGAATATACAGCACA 161241 || ||||| ||| || |||||||||||||||||| Sbjct 5331 GTAAAAGTGAGTTTTGAATTACCTGAATATACAGCACA 5294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729861360706520