Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2267 488 8e-133 >seq2267 Length=4651 Score = 488 bits (540), Expect = 8e-133 Identities = 1140/1701 (67%), Gaps = 44/1701 (3%) Strand=Plus/Plus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 ||||| ||||| | || | || || ||||| | |||||| ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG---GCTCGTATTTTGAATGGAT 68631 |||| ||| ||| | | | ||| | || | || | ||| ||| ||| | | Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACTT 2126 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| | | || |||| | | || || || |||| |||||| ||| || | Sbjct 2127 CCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAAG 2185 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| ||||| || | ||||| ||| ||| || | | | ||| Sbjct 2186 ATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTA 2245 Query 68751 AATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGC 68810 ||| ||||| ||||||||||| | ||||||||||||||||| |||||| | |||||| || Sbjct 2246 AATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 2305 Query 68811 AGTTGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCATGTGTTATGATTTTATCT 68868 |||||||||||||| | || || | |||||| | |||||| | | ||||| | | Sbjct 2306 TGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTT 2363 Query 68869 TTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTGT 68925 |||| | |||||||||| | | ||| ||||||| | ||| ||||| Sbjct 2364 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 2423 Query 68926 AGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCT 68985 | ||||| | ||||| || ||||||| |||||| || || | || ||| Sbjct 2424 AATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGTGCT 2483 Query 68986 AGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGA 69043 | |||| || || | ||||| || | ||||| ||||| || || || | ||||| | Sbjct 2484 AATTCAACAGACATT--TCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTA 2541 Query 69044 GATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATC 69103 |||| ||||| | || ||||||| |||||| ||||||| |||||| |||| Sbjct 2542 ATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 2601 Query 69104 CCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAG 69163 | || || || || || ||||||| ||| || |||||||| ||||||||||| ||| | Sbjct 2602 CTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTG 2661 Query 69164 GATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG-TCC 69222 | |||||||| | || |||||||||| | ||||| | || || ||| | | || Sbjct 2662 GGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCA 2720 Query 69223 TTTAGTTTGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGCTACA 69276 | || ||| ||||| |||| | | |||| |||||| || | ||| | Sbjct 2721 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATT 2780 Query 69277 GATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACAT 69336 || || | ||||||||| ||||| |||| || | |||| ||||| || |||| Sbjct 2781 GAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACAT 2840 Query 69337 AGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCC 69396 | ||||||||||| || || || | ||||| |||||| || || || || || Sbjct 2841 AAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCT 2900 Query 69397 TTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCAAACG 69456 || || | ||| | || |||||||||||| ||| || | |||| ||| | Sbjct 2901 TTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAA 2960 Query 69457 ACCCTAGCATTTATTACGGTCTTGTAACGC---TTCTCTTTTTCATATTGTGTATATAGC 69513 | ||| | || || || | | || |||| |||||||| |||||||| | Sbjct 2961 TCTTGTGCA---AGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 3017 Query 69514 CGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAAT 69573 ||| ||||| ||||||||| ||| || || ||||||||||| |||||||| || Sbjct 3018 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 3077 Query 69574 GACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATA 69633 | ||| | || || || |||| ||||||||||| ||| || | ||||| ||| | Sbjct 3078 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 3137 Query 69634 AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCC 69693 || | ||||| | ||| |||||| || || ||||||| | | ||| | ||| || Sbjct 3138 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 3197 Query 69694 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCT 69753 | |||||| ||||||||||| |||| ||||| || | ||| || ||| ||| Sbjct 3198 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 3257 Query 69754 CCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATTA 69813 || ||||||| || || || || | |||| | || || | ||| |||| | |||||| Sbjct 3258 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 3317 Query 69814 GATTTACCATTTGTTCCAGAAATATAA-----CT-TCCTCTTGCGCGAATATTACTAATA 69867 ||| ||||||| ||||| ||||||| || |||||| |||| | | Sbjct 3318 GATATACCATTAGTTCCTCTAATATAAGAATTCTGACCTCTT------ATATCTTGTACA 3371 Query 69868 GATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATAT 69927 | | ||||| || ||||| ||||| || | |||||| |||| ||||| ||| || Sbjct 3372 GCAACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAAT 3431 Query 69928 ATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 ||||| || || ||| | |||| | ||| |||||||| |||||||| | | Sbjct 3432 ATACCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCG 3490 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 | ||||| | |||||||||||| || | || || ||||| |||||| ||| | | Sbjct 3491 TGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAA 3550 Query 70047 ATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCAT 70106 || |||||||| | |||| ||| | ||| ||||||||| || | || | ||| Sbjct 3551 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCAT 3610 Query 70107 CAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTC 70166 || | ||| ||||| ||||| | |||||||||| ||| || | |||||| ||| Sbjct 3611 TAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTC 3670 Query 70167 CAGAGTTTTAAACCCAAAATA 70187 | ||||||||| |||||||| Sbjct 3671 TAAAGTTTTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686844582613560