Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2693 199 3e-46 seq3673 147 2e-30 >seq2693 Length=4885 Score = 199 bits (220), Expect = 3e-46 Identities = 413/612 (67%), Gaps = 17/612 (3%) Strand=Plus/Minus Query 19318 ATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGT 19377 || |||||||| ||| |||||||| || | | | ||||| || || || Sbjct 3113 ATCAAACAATTAGGAATAAAACATGTAAAGGGTATGATATTATATGGCCCTCCCGGGACA 3054 Query 19378 GGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACC--TCCCAAAA 19435 || |||||| |||| || ||| || | ||||| ||| | | | | ||| |||| Sbjct 3053 GGTAAAACACTAATAGCTAGACAAATAGGTAAAACACTAA--ATGCGAGGGATCCTAAAA 2996 Query 19436 TTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGAC 19495 || | ||||| |||||||| ||||||||||||||||||||||| ||||||||| | || Sbjct 2995 TTATTAATGGACCTGAAATATTAAATAAATATGTAGGTCAATCCGAAGAAAATATTCGTA 2936 Query 19496 GTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGT--TCTTTGCA 19553 ||| ||| || || ||| |||| | |||| | || |||| | | || || Sbjct 2935 ATTTATTTAAAGATGCAGAATTAGAATATAAACAATCTGG--AGAAAATTCATTATTACA 2878 Query 19554 CATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT---------TCTGG 19604 ||||| ||| |||||||| | || ||||| ||| ||||||||| ||| | Sbjct 2877 TATTATTATATTAGATGAAATAGATGCAATTTGTCGACAAAGAGGTAGTGGCGCATCTAG 2818 Query 19605 TGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAA 19664 || || ||| |||| | | ||||||||| | | |||||| |||| || || || Sbjct 2817 TGGGTCAGGGGTAAATGATAGCATAGTCAATCAATTATTATCAAAAATAGATGGAGTAAA 2758 Query 19665 CCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGC 19724 | | |||||||| ||| | || || ||||| |||||| | || |||||||| || Sbjct 2757 CAGTTTAAATAATATATTATTAATCGGGATGACAAATAGAATAGATTTAATAGATGAAGC 2698 Query 19725 CTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGG 19784 || ||| |||| ||||| || ||| || | || ||||| ||||| || || || Sbjct 2697 ATTGTTAAGACCAGGTCGATTTGAATTACATATTGAAATATCATTACCAAATAAAGAAGG 2638 Query 19785 ACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGA 19844 | | |||| ||||| || |||||| || ||| |||||||||| |||||| | Sbjct 2637 TAGAATTCAAATATTAAATATTCATACAAAAAATATGAGACAAAATAATAAATTAAATAA 2578 Query 19845 CGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGA 19904 ||||| || |||||||| | || | || ||| | | || |||||| |||| Sbjct 2577 GGATGTTAATATAGAAGAATTAGCTGAAAAAACTCCAAATTTTTCTGGTGCAGAAATTGA 2518 Query 19905 GGGATTAGTGAG 19916 |||||||| || Sbjct 2517 AGGATTAGTAAG 2506 >seq3673 Length=8284 Score = 147 bits (162), Expect = 2e-30 Identities = 276/403 (68%), Gaps = 2/403 (0%) Strand=Plus/Plus Query 40868 TGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA-CTA 40926 |||||| ||||| ||||||||||||| | | | |||||||| || ||||| ||| || Sbjct 6226 TGATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAATAT-ACAGATA 6284 Query 40927 TGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGATTA 40986 || | | |||||| | |||||| | ||||||||| | ||||| || |||| Sbjct 6285 TGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAAATTTAATTA 6344 Query 40987 AATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATT 41046 || ||||| | | |||| || || ||||| || ||||| || || || || Sbjct 6345 AAAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATC 6404 Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 |||||||| || ||||||||| | |||||||| ||||| |||| | || || | | Sbjct 6405 AAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGGAAAATTAT 6464 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 ||||| ||||||||||||| |||| | || || ||||| || || || || || Sbjct 6465 CATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAATATTGCTT 6524 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTG 41226 ||| || | | || |||||||| ||||| || || ||| | | | ||||||| Sbjct 6525 CCTATTCTATATTTACATATATGATAGCACAAGTATGTAACTTACAGGCAGCTGAATTTA 6584 Query 41227 TTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGA 41269 | || || || ||| ||| |||| | |||||| || || Sbjct 6585 TACATGTATTGGGTAATGCTCATGTTTATAATAATCATATTGA 6627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397419771761395