Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2267 122 7e-23 >seq2267 Length=4651 Score = 122 bits (134), Expect = 7e-23 Identities = 787/1244 (63%), Gaps = 36/1244 (3%) Strand=Plus/Plus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 |||||||| || | |||| ||| || |||||||| | || | || | || || ||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGC-AATCGATTGAACGCT 130674 ||| | || || || | || | | || || ||||| ||| ||| |||| || || Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTT-CGCTAATATATTGGACACT 2125 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || |||| || || | || |||| |||| || ||| |||| || | | || Sbjct 2126 TCCATTGTGAGCAATTAATT-GTTGTTTCATATCTTCATCCCACAAACCTCTATCAAAAA 2184 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| ||| | | || |||||| | || |||||| || Sbjct 2185 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 2244 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | |||||||| ||||| || || || || ||||||| || | | Sbjct 2245 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 2304 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | || ||||| | | || || | | |||||| | Sbjct 2305 CTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTT 2364 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATT 130970 | ||| |||||||||||| | | || | || || |||||||||||||||| Sbjct 2365 TTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATT 2421 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 ||| ||| |||| || || ||||| | | ||||| || || | || | | Sbjct 2422 GTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGTG 2481 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 | | || ||| ||||| | ||||| || || || ||| |||||||| Sbjct 2482 CTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTA 2541 Query 131091 ATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGAC 131150 ||| ||| |||| || || || ||| || | | | ||||| | ||||| | | Sbjct 2542 ATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 2601 Query 131151 CCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCGGT 131208 | |||| || | || | |||| ||| ||||| | | ||| || | || | Sbjct 2602 CTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGC-TTCTTTAATT 2660 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 ||| ||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 2661 GGG-TAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 2719 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATAT 131328 | ||||| | |||| ||| |||| | ||||||| | || || Sbjct 2720 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 2779 Query 131329 TGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCA 131388 ||| |||| ||||||||| || ||| ||| | || | || ||||| || Sbjct 2780 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACA 2839 Query 131389 CAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GT 131447 || ||||| | || || || || ||||||| |||||| ||||| ||| |||| | Sbjct 2840 TAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATT-GCATGCAT 2898 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA--A 131505 | || || | ||| || || || ||||| | |||| ||| |||| || | || | Sbjct 2899 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTT--GTAATATAGCAAACCA 2956 Query 131506 GAGTTTTCGAGCA--GACAATTGATATT--TGTATTGGCCGCGTTTTTCGTAATTTTCGT 131561 | | | | ||| ||| || | || | ||| | || ||| || ||| | Sbjct 2957 TAAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTC----TTCTTCATATTTTGTAT 3012 Query 131562 ACAACGTTTCAAAGT--TTTGGCCAA-ACGAACTGTCCAAATTGGGACATTCGCTGGGAC 131618 | ||| ||||||| | | | |||| | ||| ||| |||||||| | |||| Sbjct 3013 ATAACTTTTCAAATTCGTCTCCCCAAGATTCACT---TAAACCTGGACATTCATTAGGAC 3069 Query 131619 ACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATA 131678 |||||| | ||| || | || |||| |||||||| ||||| || ||||| | Sbjct 3070 ACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAA 3129 Query 131679 ACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-tCAAATTT 131737 || || || | ||||| |||| || |||||| || |||| ||||||| | |||| | Sbjct 3130 TAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTA-CCATGATTTTTTCTTAAATCT 3188 Query 131738 AAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 ||||| || ||||| || | |||||| || || | ||| ||||| Sbjct 3189 AAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGC 3232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424895667096648