Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2267 122 1e-22 seq6374 84.2 3e-11 >seq2267 Length=4651 Score = 122 bits (134), Expect = 1e-22 Identities = 439/678 (65%), Gaps = 9/678 (1%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| |||| ||||||||||| |||||||||| ||||| ||||||| || || Sbjct 2243 GTAAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGA 2302 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TCTCCTTGATGCGTT 110825 ||||||||||| ||||| | | ||| || | | || | | | ||| || || Sbjct 2303 AGCTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTT-ATTTTTT 2361 Query 110826 CCTTGAGAACATCCCAGTC---GTAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAAC 110881 || | | |||||| || || || | | ||| | || |||||| ||||| Sbjct 2362 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATT-CCACATATCAAAT 2420 Query 110882 TGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCA 110941 || | | |||||| || ||| ||||| | | | |||||| | ||| || ||| Sbjct 2421 TGTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGT 2480 Query 110942 GCCAATTC-ACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 111000 || ||||| |||| | || | | || | |||||| || ||||| || | ||| Sbjct 2481 GCTAATTCAACAG-ACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 2539 Query 111001 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 111060 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 2540 TAATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 2599 Query 111061 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 111120 ||||| || || | |||||||||| || | |||| || ||| || | || Sbjct 2600 TCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAAT 2659 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 || ||| ||||||| ||||| | | | || |||| | |||| ||| || || || || Sbjct 2660 TGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 2719 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 || | ||||| | ||| ||| | ||| || ||| | || | || || Sbjct 2720 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 2779 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 ||| |||||||| |||||||| ||||| ||||| || | ||||| ||| Sbjct 2780 TGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACA 2839 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||| || ||||| || || ||||| ||||| ||| || ||||| ||||| Sbjct 2840 TAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATC 2899 Query 111361 CTTGTAGAGCATGTAGGG 111378 || || | ||| || || Sbjct 2900 TTTATATAACATATATGG 2917 >seq6374 Length=1478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 182481 AGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCATCA 182540 ||||||||||| || | || |||||||| | | | ||||||||||||||| |||||| Sbjct 1074 AGACTGGGCCAAAATTTATGAATCATATTAATTAATAAACCCTTGATGTGAGATCCATCA 1015 Query 182541 TTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAGTTCAGAAACATCTTG 182596 | ||| ||| ||||||||||| | | |||||| | |||| | || |||||| Sbjct 1014 TAATCCTGATCCGTCATAATCATTAAAGAACCATATCTAAGTCCTTTAATATCTTG 959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627973286858400