Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq2835 111 7e-20 >seq2835 Length=4028 Score = 111 bits (122), Expect = 7e-20 Identities = 330/503 (66%), Gaps = 11/503 (2%) Strand=Plus/Minus Query 64890 ATCCTGTGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAA 64949 |||| || || || || | ||||||||| || |||| | ||||||| |||| |||| Sbjct 3416 ATCCAGTTCCTATTCCTTCACAGCCATTTACTAGAATCGTAGGAATAACTGGTATATAAT 3357 Query 64950 AGATAGGCTCAACAATGAGACCATCATCATCCAAATACTTCAAAATGGCATCATCCTCTT 65009 | || || | | | || || |||| ||||| || ||||| | |||||| | || Sbjct 3356 ATTGTGGTTCTATTTTTTGTCCCTCTTCATTTAAATATTTTAAAATCGGATCATCATATT 3297 Query 65010 TTGGAAATATAGAACGAGTTATTTTATTCAA-TTGAGTATAAATATATCT---TTCGGAT 65065 ||||||| | ||| | || ||| || ||| | |||||||| | | ||| Sbjct 3296 CATTAAATATACTTCTAGTGGATG-ATGCAAGTTTTGTAAATATATATCTAGCTGCAGAT 3238 Query 65066 GCGTGGTCTTGTCCAG-TTCGT--CGTGTTCCAAACTGACCATTTGGCATTAATAAATTA 65122 || | ||| ||| ||| | | | ||||| || || ||| ||| ||||| Sbjct 3237 GCAT---CTTTACCACCTTCTTTTCTACTACCAAATTGTCCGCATGGTTCTAAAAAATTT 3181 Query 65123 ATATTGTTTGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTAAACTCGCT 65182 || || |||||||||| ||| | |||||||| ||||| | | | ||| | Sbjct 3180 ATGTTATTTGAACCAACAAATGTTTGAGCCATATTTATAATAGTTTGTTGTAATGATGAC 3121 Query 65183 TCACCGTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATT 65242 || || ||||||||| | |||||| | | ||| || || |||||||||||| | Sbjct 3120 TCTCCATGATGATATGCACTATGTTCTGCAATATAACCTACAAGTTGAGCAACTTTACAT 3061 Query 65243 TCCGTTGTTAAATTCTTTTTAAATGCAGAATACAATATTTTCCGTAAACTAATTTTCAAT 65302 || || ||||||| ||||||| | ||| || | ||| | | | |||| || Sbjct 3060 TCATTTCTTAAATTTCTTTTAAAGCAACCATATAAAACTTTTCTTTGTCCGGGTTTCCAT 3001 Query 65303 CCATCCATTAAATTAGGAATGCTTCTGTCACAATCATATTTTGAGAAATGTATGAATTCT 65362 |||||||| | ||| || || ||||| || |||||| | || ||| || |||||| Sbjct 3000 CCATCCATAATATTCGGTATACTTCTTTCTGTGTCATATCTAGAATAATAAATTAATTCT 2941 Query 65363 TTGTTAATAAATTCTTCATATGA 65385 || || | ||| || | |||||| Sbjct 2940 TTATTTACAAAATCATAATATGA 2918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235658517694350