Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq4931 87.8 2e-12 >seq4931 Length=1290 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | ||||| || | || |||||||| || ||||| ||| Sbjct 1133 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCC 1192 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC-A 27106 || | ||||| | || ||| |||||||||||| ||| |||| || || || || | | Sbjct 1193 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAAAAGGAATTCCCCCTGACCAA 1252 Query 27107 ACAGCGTTTAA-TATACGCCGGCAAACAATTGGAAGA 27142 ||| ||| | | || || |||||||| ||||| Sbjct 1253 ACAAAAACTAATTTTTTGCTGGAAAACAATTAGAAGA 1289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434877740566080