Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq3912 102 1e-16 >seq3912 Length=4776 Score = 102 bits (112), Expect = 1e-16 Identities = 273/407 (67%), Gaps = 19/407 (5%) Strand=Plus/Plus Query 136368 AAACTGGCAACATCAGGAAAGGGAATACTTGCTGTTGATGAATCTACAAATACTTGTGGG 136427 ||||| | | || ||||||||||||| | |||| |||||||| ||| | || | | Sbjct 1829 AAACTTGTAGCAGCAGGAAAGGGAATTTTAGCTGCAGATGAATCAACACAAACAATTAAG 1888 Query 136428 AAAAGATTGGCTAGTATTGGAGTAGAAAATACAGAGGCAAATAGA-CAGGCATACAGAGG 136486 |||||||| | || ||| | | || || || | | ||||||| | || || |||| Sbjct 1889 AAAAGATTTGATAATATAAAAATCGAGAACACTGTTGAAAATAGAGCTAGC-TATAGAGA 1947 Query 136487 TATGTTATTTACCACAGAGGGATTAGGTAATTATATTAGTGGTGCTATCTTATTTGAAGA 136546 | |||||||| || | |||||||| || | ||| |||||| || ||||||||||| Sbjct 1948 TTTGTTATTTGGAACTAAAGGATTAGGAAAATTCATTTCTGGTGCAATTTTATTTGAAGA 2007 Query 136547 AACACTATTTCAAGATCATGCTGATGGAGAAAGCATGATTGCAAA---GTTAGAGAAGCA 136603 ||| |||||||| | ||| | ||| | | ||| | | ||| ||| | | | Sbjct 2008 AACTTTATTTCAAAAAAATGAAGCTGGTG-TACCAT--TAGTAAATTTATTACATGATGA 2064 Query 136604 AGGAATTATACCAGGTATCAAGGTAGATAAAGGATTAAAACCATTAGT---TGGTGCATT 136660 ||| || |||||||| || || || || ||||| ||| ||||| |||| | Sbjct 2065 AGGTATAATACCAGGAATTAAAGTTGACAAAGGTTTA-----GTTAGTATCCCATGCACT 2119 Query 136661 AGAGCATGAGACATATTGTTCTGGATTAGATGGTCTAACAGA-AAGAGCAAGTGACTATT 136719 || |||| | || || || || || || |||| | | |||| || |||| Sbjct 2120 -GATGATGAAAAATCAACCCAAGGTTTGGACGGATTAGCAGAGAGGTGCAA-AGAATATT 2177 Query 136720 ATGGTAGAGGTGCAAGATTTGCTAAGTGGAGAGCAGTTCTACAAATT 136766 || |||||||||||||| || |||||||||||| || |||| Sbjct 2178 ATAAAGCTGGTGCAAGATTTGCAAAATGGAGAGCAGTTTTAGTAATT 2224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631368169449640