Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq3673 95.1 1e-14 >seq3673 Length=8284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 214/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 126075 TCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTC- 126133 || |||||||| ||||| ||| |||| || ||| ||| || |||||| | ||| Sbjct 6627 TCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGCCTGT 6568 Query 126134 AAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGG 126193 |||| |||| ||| ||| | | || ||| | || || ||| ||||||||||| || Sbjct 6567 AAGTT-ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGG 6509 Query 126194 AACACCTAAAAATATATCAGCACTTCTTTGATA--TAATTGACAATTTAATTTACCCTCT 126251 ||| || | || |||| | ||||||||| |||| ||| |||||| || || Sbjct 6508 AACCCCAAGCCCTAAATCACAAGATCTTTGATACATAAT--ACATGATAATTTTCCGTCA 6451 Query 126252 TGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTA 126311 || ||||||||| | | | || ||||| |||||||||||| ||| | || | Sbjct 6450 AAAACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTT 6391 Query 126312 GGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATA 126371 ||||||||| | | ||| |||| | | | |||| |||||||| | |||| Sbjct 6390 ACATTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATA 6331 Query 126372 ACTGATTTTAATTGATC 126388 | |||||||||||| Sbjct 6330 ATATTTTTTAATTGATC 6314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408561156128153