Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2873 104 2e-17 >seq2873 Length=4471 Score = 104 bits (114), Expect = 2e-17 Identities = 288/435 (66%), Gaps = 10/435 (2%) Strand=Plus/Plus Query 4247 AACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAA 4306 |||||| | ||||| || || | |||| ||||| |||||||| ||||| |||| ||| Sbjct 4042 AACACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAA 4101 Query 4307 CGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAG 4366 || || ||||| ||| ||| ||||| | | | || ||| |||| || Sbjct 4102 AGATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAA 4161 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 | | | || |||| ||||| |||||||| ||||| || ||| ||| | || || Sbjct 4162 ACATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCAT 4221 Query 4427 TCCAATTAATCTCACA-GGTAGCGCGTATGTCAAAAACTCTTGTTCTAT--AGTT--ACG 4481 ||||||||| ||||| |||| | || ||| ||| || ||| | | || || Sbjct 4222 TCCAATTAAA-TCACATGGTAAAG---AT-TCACAAATAAATGATCTCTCTACTTCAACT 4276 Query 4482 GCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAAC 4541 |||||| | | ||||| || | |||| | | ||||||| |||| | | | | Sbjct 4277 GCTTCTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAACTATAA 4336 Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 | ||| || ||||||| ||| | |||||| ||||||||||| | ||| ||| ||| Sbjct 4337 ATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAAT 4396 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 ||||| || | | | | | ||||||| |||||| || || ||| ||| | Sbjct 4397 GTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTA 4456 Query 4662 AAGAATATGCCTTCT 4676 || ||||| |||||| Sbjct 4457 AATAATATACCTTCT 4471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427010674295507