Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2267 522 4e-143 >seq2267 Length=4651 Score = 522 bits (578), Expect = 4e-143 Identities = 1149/1699 (68%), Gaps = 40/1699 (2%) Strand=Plus/Plus Query 76923 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 76982 ||||| ||||| | || | ||||| ||||| | ||||| ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 76983 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGTTTGTATTTTGAATGGA-ACC 77041 |||| |||||| | | || ||| | || | || | | || | | | |||| || Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 2125 Query 77042 ACCATC-TGATA---TAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCTGTTA 77097 |||| ||| ||||||| | || ||||| |||| |||||| ||||| | | Sbjct 2126 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAA--CCTCTATCAAA 2182 Query 77098 AAACTCTA--AGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGAGT 77155 || ||| | | ||||||||| || | ||||| ||| ||||| | | | Sbjct 2183 AAGATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATA 2242 Query 77156 GTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGA 77215 |||||| ||||| ||||||||||| | ||||||||| |||||||||||||| | ||| || Sbjct 2243 GTAAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGA 2302 Query 77216 AGCAGTTGGCATAGGTGCCACCAATAAACT--ATTTCTGAGACCATGTGTTCTGATTTTA 77273 ||| |||||||||||||| | || || | |||||| | |||||| | || ||||| Sbjct 2303 AGCTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTT 2360 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAA---CATCCCAAAGATCGTAT 77330 | ||||| | | |||||||||| | | ||| ||| ||| | ||| || Sbjct 2361 TTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAAT 2420 Query 77331 TGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCA 77390 |||| ||||| | || || || ||||||| |||||| || || | | || Sbjct 2421 TGTAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGT 2480 Query 77391 GCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTG 77450 |||| |||| | | ||| || || | ||||| ||||| || || || | ||||| Sbjct 2481 GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTT 2540 Query 77451 AGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAAT 77510 | |||| ||||| | ||| | ||||| |||||| ||||| | |||||||||| Sbjct 2541 AATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 2600 Query 77511 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATA 77570 || || ||||| || |||||||||| ||| || ||||| || ||| ||||||| ||| Sbjct 2601 CCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATT 2660 Query 77571 GGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCC 77630 || |||||||| | || |||||||||| | ||||||| || | |||| | || Sbjct 2661 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCA 2720 Query 77631 TTTAGTTTAAGAAAATCAAA-----TCTTCCATCTAT-AACAAACATGTTCAAAGCTATA 77684 | || ||| ||||| ||| | || ||||| |||||| | || || || Sbjct 2721 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATT 2780 Query 77685 GATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACAT 77744 || || | ||||||||| ||||| |||| || || |||| ||||| || |||| Sbjct 2781 GAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACAT 2840 Query 77745 AGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCC 77804 | ||||||||||| || || || | ||||| ||| || || |||||||| || Sbjct 2841 AAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCT 2900 Query 77805 TTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 77864 ||||| | ||| | || || |||||||| || || | |||| ||| | Sbjct 2901 TTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA-- 2958 Query 77865 ACTCTAGCTTTTATCATAGATTTGTATC---GCCTCTCTCTTTCATATTGAGTATATAGC 77921 | ||| | | | | | ||| | || | ||| |||||||| ||||||| | Sbjct 2959 AATCTTG-TGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 3017 Query 77922 CGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAAT 77981 ||||||||| ||||||||| ||| || || || |||||||| || ||||| || Sbjct 3018 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 3077 Query 77982 GACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 78041 | ||||| || ||| || |||| ||||||||| | |||||||| ||| | |||| | Sbjct 3078 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 3137 Query 78042 AATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCC 78101 |||| |||||| | ||| |||||| || || ||| ||| | | ||| | ||| || Sbjct 3138 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 3197 Query 78102 ATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCT 78161 | |||||| ||||||||||| |||| ||||| ||| | | ||| || ||| || Sbjct 3198 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 3257 Query 78162 CCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTA 78221 || ||||||| ||| || || || | |||| |||| || |||||||||| | ||| || Sbjct 3258 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 3317 Query 78222 GATGTTCCATTTGTTCCAGAAATATA--ACTTC-CACTTGCGCGAATAT-TACTAATGGA 78277 ||| | ||||| ||||| |||||| | ||| || | | |||| | || | | Sbjct 3318 GATATACCATTAGTTCCTCTAATATAAGAATTCTGAC---CTCTTATATCTTGTACAGCA 3374 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | ||||| || ||||| | ||| || | ||| || |||| ||||| || | || Sbjct 3375 -ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATAT 3433 Query 78338 ACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAA 78396 ||| || ||| || |||| | ||| |||||||| |||||||| | | Sbjct 3434 ACCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTG 3492 Query 78397 CAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGAT 78456 ||||||| |||||||||||| || | ||||| || || |||||| ||| | || || Sbjct 3493 GGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAAT 3552 Query 78457 TGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCA 78516 |||||||| | |||| ||| | || | ||||||||| | | || | ||| | Sbjct 3553 GATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTA 3612 Query 78517 ACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 78576 | | ||| ||||| | ||||| | |||||||| ||| || || |||||| ||| | Sbjct 3613 ATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTA 3672 Query 78577 AAGTTTTAAAACCAAAATA 78595 |||||||||| |||||||| Sbjct 3673 AAGTTTTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694603857150560