Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2267 540 1e-148 >seq2267 Length=4651 Score = 540 bits (598), Expect = 1e-148 Identities = 1151/1698 (68%), Gaps = 38/1698 (2%) Strand=Plus/Plus Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCC 75577 ||||| ||||| | || | ||||| ||||| | ||||| ||||||| |||||| Sbjct 2007 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 2066 Query 75578 CAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGAT---TTGTATTTTGAATGGAT 75634 |||| |||||| | | || ||| | || | || | | | ||| ||| | | Sbjct 2067 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACTT 2126 Query 75635 CCGCCATCAGATAT-AATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAA 75693 || | || || |||||| | || || || |||| |||||| ||| || | Sbjct 2127 CCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAAG 2185 Query 75694 AACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTA 75753 | || | | | ||||||||| |||| ||||| ||| ||||| | || | ||| Sbjct 2186 ATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTA 2245 Query 75754 AATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGC 75813 ||| ||||| ||||||||||| | ||||||||| |||||||||||||| | ||||||||| Sbjct 2246 AATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGC 2305 Query 75814 AGTCGGCATAGGTGCCACCAATAAACT--ATTTCTGAGACCATGTGTTCTGATTTTATCT 75871 || ||||||||||| | || || | |||||| | |||||| | || ||||| | | Sbjct 2306 TGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTT 2363 Query 75872 TTTAGATATTTCCAATCCCAA-AGATCTGATGGTACAA---CATCCCAGAGATCGTATTG 75927 |||| | | |||||||||| | | | || ||| ||| ||| | ||| |||| Sbjct 2364 TTTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTG 2422 Query 75928 TAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCC--GTCCTTTTCA 75985 || ||||| | ||| || || ||||||| ||| || | || || ||| | Sbjct 2423 TAATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGT-- 2480 Query 75986 GCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTA 76045 |||| ||| | | ||||| || | ||||| ||||| || || || | ||||| Sbjct 2481 GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTT 2540 Query 76046 AGATCTTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGT 76105 | |||| ||||| | ||| | ||||| |||||| ||||||| |||||||| | Sbjct 2541 AATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 2600 Query 76106 CCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATA 76165 || || ||||| || |||||||||| ||| || ||||| || ||||||||||| ||| Sbjct 2601 CCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATT 2660 Query 76166 GGGTAATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCC 76225 ||||||||||| | || |||||||||| | |||||| || | |||| | || Sbjct 2661 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCA 2720 Query 76226 TTTAGTTTGAGAAAATCAAA-----TTTTCCATCTATC-ACAAACATATTAAGAGCTATA 76279 | || ||| ||||| ||| |||| |||||| ||||| || | || || Sbjct 2721 TATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATT 2780 Query 76280 GATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCAT 76339 || || | ||||||||| ||||| |||| || || |||| ||||| || ||| Sbjct 2781 GAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACAT 2840 Query 76340 AGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCC 76399 | |||||||| || || ||||| | ||||| ||| || || || |||| || Sbjct 2841 AAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCT 2900 Query 76400 TTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACG 76459 ||||| | | | | || ||||||||||| || || | |||| ||| | Sbjct 2901 TTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA-- 2958 Query 76460 ACTCTAGCTTTTATTATAGATTTGTATC---GCTTCTCTCTTTCATATTGTGTATATAAC 76516 | ||| | | | | | ||| | || || ||| |||||||| |||||||||| Sbjct 2959 AATCTTG-TGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 3017 Query 76517 CGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAAT 76576 ||||||||| ||||||||| ||| ||||| ||||||||||| |||||||| || Sbjct 3018 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 3077 Query 76577 GACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATA 76636 | ||| | || ||| || || | ||||||||| | |||||||| ||| | |||| | Sbjct 3078 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 3137 Query 76637 AATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCC 76696 |||| |||||| | ||| |||||| || || ||| ||| | | ||||| || || Sbjct 3138 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 3197 Query 76697 ATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCT 76756 | |||||| ||||||||||| |||| ||||| || | | || || ||| || Sbjct 3198 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 3257 Query 76757 CCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTA 76816 || ||||||| ||| || || || | |||| |||| || |||||||||| | || || Sbjct 3258 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 3317 Query 76817 GATGTACCATTTGTTCCAGAAATATA--ACTTC-CACATGCACGAATATTACTAATAGAT 76873 ||| ||||||| ||||| |||||| | ||| || | | |||| | || Sbjct 3318 GATATACCATTAGTTCCTCTAATATAAGAATTCTGAC---CTCTTATATCTTGTACAGCA 3374 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | ||||| || ||||| ||||| || | |||||| |||| ||||| ||| | || Sbjct 3375 ACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATA 3434 Query 76934 CCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 76992 || || ||| ||| |||| | ||| |||||||| |||||||| | | Sbjct 3435 CCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGG 3493 Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 ||||||| |||||| ||||| || | ||||| ||||| |||||| ||| | || || Sbjct 3494 GGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATG 3553 Query 77053 GTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAA 77112 |||||||| | | || ||| | ||| | ||||||||| | | || | ||| || Sbjct 3554 ATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAA 3613 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 | ||| ||||| ||||| | | | |||||||| ||| || || |||||| ||| || Sbjct 3614 TAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAA 3673 Query 77173 AGTTTTAAAACCAAAATA 77190 ||||||||| |||||||| Sbjct 3674 AGTTTTAAATCCAAAATA 3691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712867749545280