Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F000005395.1_202004-12-09] 7,479 sequences; 17,954,629 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq2693 113 6e-20 seq3673 100 4e-16 >seq2693 Length=4885 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 155871 TTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAATTCCAAC 155930 ||||| ||||||| | || | || || |||||| ||||| || | ||||| || Sbjct 2620 TTTAATATTTGAATTCTACCTTCTTTATTTGGTAATGATATTTCAATATGTAATTCAAAT 2679 Query 155931 CGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACCTATGATT 155990 || || |||||||| |||||||| || ||||| || ||| || ||||| || || | | Sbjct 2680 CGACCTGGTCTTAACAATGCTTCATCTATTAAATCTATTCTATTTGTCATCCCGATTAAT 2739 Query 155991 AAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGACTA 156045 || || || |||||| | ||| || |||||||| || |||||||||||||||| Sbjct 2740 AATATATTATTTAAACTGTTTACTCCATCTATTTTTGATAATAATTGATTGACTA 2794 >seq3673 Length=8284 Score = 100 bits (110), Expect = 4e-16 Identities = 228/337 (68%), Gaps = 12/337 (4%) Strand=Plus/Plus Query 50478 GATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGGAGCGCGTTACATAAAT-TG 50536 ||| | || || |||| || ||||||||||| |||||||| || || | | || || Sbjct 6227 GATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAATATACAGATATG 6286 Query 50537 CGACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTGAA 50596 | | | ||||| ||| |||| || |||||| | |||| ||||||| | || Sbjct 6287 C-ATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAAATTTAATTAA 6345 Query 50597 AACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATCA 50656 || | || | | || ||| | || || |||||| || ||| ||||||| Sbjct 6346 AAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGATCA 6405 Query 50657 AACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATG----CCACAGACAATGTTT 50712 || | |||||||| |||||| |||||||||||||||||| || || || | Sbjct 6406 AATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACGGAAAA----T 6461 Query 50713 TATCCTGT-CAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 |||| ||| ||| ||||||||||| |||| | || | || ||||| ||||| | Sbjct 6462 TATCATGTATTATG-TATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCAATATT 6520 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAG 50808 ||||| || || |||| || ||| |||| || |||| Sbjct 6521 GCTTCCTATTCTATATTTACATATATGATAGCACAAG 6557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667012836807240