Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq12 199 3e-46 >seq12 Length=816096 Score = 199 bits (220), Expect = 3e-46 Identities = 438/649 (67%), Gaps = 17/649 (3%) Strand=Plus/Minus Query 101633 AATCTAAGTGTTGGAAACGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCAT-CAAT 101691 ||| |||| || ||||| || |||||||| | ||||| || || | ||| | |||| Sbjct 648188 AATTTAAGAGTAGGAAAAGGGTAAGGAGTTCTATTTAACTGAATCTTTA-AGCTTTCAAT 648130 Query 101692 GTGATCTACATAGATGTGAGCATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATT 101751 |||| ||| | ||||||| || | ||| ||||| || | | | || || Sbjct 648129 ATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGCCTGTAAGTT 648070 Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 | || || || ||||| | || || | ||||||| |||||| || ||||| || || Sbjct 648069 ACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACCCC 648010 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 | ||| | |||| ||||||||||||| ||| || | ||||| ||| | ||||| Sbjct 648009 AAGCCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCGTCAAAAACATA 647950 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 |||||||| ||| | ||||||||| || || |||||| | | ||| |||||||| Sbjct 647949 AAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCA 647890 Query 101932 AGCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTT 101991 ||||||| | || | |||| ||||| | |||| || || || | | ||| Sbjct 647889 TGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATATTTTT 647830 Query 101992 TAATTGGTCAACTCCTTCTCCTTTATA---ATCGCGCCCAACACCTTTATATTCTGCTCC 102048 |||||| |||||||||| ||||||| ||| || | | || ||||||| || || Sbjct 647829 TAATTGATCAACTCCTTTGTCTTTATAATTATCATGC---ATATCTGTATATTCAGCACC 647773 Query 102049 GAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC---TCCTTCATCTCTGTCATA 102105 ||||||||||| ||||||||||| | || || ||||| |||| ||| || ||| Sbjct 647772 AAAATGCCTCCATTGAAATCCATAAATTGGACCGAGATCATTAACTTC-TCTATGAAATA 647714 Query 102106 AAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGC 102165 | | | |||||||||||| || | |||||| || ||||| || ||| Sbjct 647713 ATTTTCTA--TTATCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCTTACGTTTTT 647656 Query 102166 TGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAAC 102225 | || | | || | | || ||||| ||||||||||| | |||||| | || Sbjct 647655 TTCTAACAAAGTATTTCCATTTGTTTCCCCTCTTATAAACCACAATAATTCTTCGATAAT 647596 Query 102226 ACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAA---ATTCATTT 102271 |||||| ||||| | | || || ||||| | ||||| |||||||| Sbjct 647595 ACCTCTTATAAATAATTTTTTTGTTGTTAATAATGGAAAATATTCATTT 647547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361249095485978