Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq11 376 3e-99 seq2 188 8e-43 >seq11 Length=923120 Score = 376 bits (416), Expect = 3e-99 Identities = 995/1505 (66%), Gaps = 31/1505 (2%) Strand=Plus/Minus Query 53137 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 53196 ||| ||||| || || ||||| ||| ||||| | | | |||||| ||||| || Sbjct 449384 ATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTAAATGTTACTTGT 449325 Query 53197 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 53256 ||| ||||| | ||| |||||||||||||||||||| | |||||| || || |||||||| Sbjct 449324 ATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 449265 Query 53257 TGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCC 53314 ||| | || || | |||||| | || | | | || ||||| | ||||| ||| Sbjct 449264 TGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTTTTAATAAATCC 449207 Query 53315 CAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGTAGAATACCGTTA 53371 |||| |||| | ||| | ||||| || || | Sbjct 449206 CAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGG 449147 Query 53372 CTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTCAGCTAGTTCACAA 53428 || || | || | ||| ||||| || ||||| || | ||| | |||| |||| | Sbjct 449146 CTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT--GCTAATTCAACA 449090 Query 53429 CTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCT 53488 | ||||| || | ||||| || || || || || | ||||||| |||| ||| Sbjct 449089 GACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAGCT 449030 Query 53489 TC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 53546 || ||| | || ||||||| |||| || ||||| | |||||||||||||| || | Sbjct 449029 TCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTC 448972 Query 53547 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 53606 | || || ||||||| ||| || ||||| || ||||||||||| ||| || ||||||| Sbjct 448971 CTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAAT 448912 Query 53607 TAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 53666 | | || |||||||||| | ||||| ||| | ||| | ||| | | ||| Sbjct 448911 TTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTT 448852 Query 53667 GAAAATCAAA-----TTGTCCATCTAT-TACAAACATGTTCAATGCAATAGATGCCAGAT 53720 ||||| ||| || | ||||| ||||| | |||||||| || |||| || Sbjct 448851 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCCAAAT 448792 Query 53721 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 53780 ||||||| ||||| |||| || | |||| ||||| ||| || | ||||||| Sbjct 448791 TACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATAAGTTACTAC 448732 Query 53781 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 53840 | || || ||||||||||||| ||||||| || || || ||||| ||||| | | Sbjct 448731 ATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATATAACA 448672 Query 53841 TGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCT 53900 | |||| |||||||||||| || || || || || ||| | | | || Sbjct 448671 TATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGTGCAA 448612 Query 53901 TTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGT 53960 | | | ||| | |||||| ||| ||| |||||| || |||||| |||| Sbjct 448611 GGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAACTTTTCAAATTCGT 448552 Query 53961 CTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCG 54019 |||||| || ||| | || || |||||||||| |||||||| || | ||| | | Sbjct 448551 CTCCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTTTTTA 448493 Query 54020 TCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 54079 | || || |||| ||||||||| | |||||| | ||||| ||| ||||| ||||| Sbjct 448492 TTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCGA 448433 Query 54080 GTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 54139 | ||| ||| || || || ||| ||| | | ||| | || | | |||||| ||| Sbjct 448432 GCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAA 448373 Query 54140 TGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATG 54199 ||||| || || | |||| | | | ||| | ||| ||| || ||||||| Sbjct 448372 TGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTTGATCTACA 448313 Query 54200 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 54259 || || || || | |||| |||| || |||||||||| | |||||| ||| |||||| Sbjct 448312 TACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGATATACCATTA 448253 Query 54260 GTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATAGACCTATCCCCC 54317 || || |||| || | ||| | | |||| | | | ||||| || | Sbjct 448252 GTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAACTCCTATGCCGC 448195 Query 54318 CTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTAT 54377 |||| ||||| || || || ||| ||||||| || ||| | || || || ||| || Sbjct 448194 CTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTTCAATAGAAT 448135 Query 54378 CATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTA 54436 | |||| | ||| ||||||||| |||||||| | || ||||| | |||| Sbjct 448134 CTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGGGTTCCTGAATTA 448076 Query 54437 AATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATA 54496 ||||| || || | ||| || || || |||||| ||| | || || || || || | | Sbjct 448075 AATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATATGTTTCTAAA 448016 Query 54497 GCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGT 54556 ||| || | ||| | ||||||||| | || || | |||||| | || ||||| Sbjct 448015 GCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAATGTTGAGGA 447956 Query 54557 CTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCA 54616 | ||||| || || || || ||| | || || ||| ||| ||||||||||| ||| Sbjct 447955 CGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTTTTAAATCCA 447896 Query 54617 AAATA 54621 ||||| Sbjct 447895 AAATA 447891 >seq2 Length=1580255 Score = 188 bits (208), Expect = 8e-43 Identities = 394/583 (68%), Gaps = 3/583 (1%) Strand=Plus/Minus Query 24150 TGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 24209 |||||||| || ||||| ||||||||||| || ||| || | || | | | Sbjct 1448002 TGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1447943 Query 24210 CGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCC 24269 | ||||||| |||||| || | ||| |||| ||| || || |||||||| Sbjct 1447942 TGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATACCTTCTACACAT 1447883 Query 24270 GCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAA 24329 ||| || | || |||||| || || | |||| ||||| || |||||| Sbjct 1447882 GCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTATCATTAATCCATTTAGCAGCCCAT 1447823 Query 24330 TCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCA 24389 || || ||||||| || || | || ||||||| || | || |||| Sbjct 1447822 AATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAATAAATTTAACCTTTCT 1447763 Query 24390 TTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCA 24449 || |||||||| ||| |||| || || | |||||| |||| ||||| || |||||| Sbjct 1447762 TTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTCAGAATGTATATTTTCA 1447703 Query 24450 ATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAAT 24509 | || |||||||| || || | | || || | || | ||||||| | ||||| Sbjct 1447702 ACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCTACTTCTCTTAAAAAT 1447643 Query 24510 CGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATG 24568 | || || |||||||| |||||||| ||||| ||||||||||| || || ||||| Sbjct 1447642 T-TACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAAAAAATGCTAAAACATG 1447584 Query 24569 TTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATAT 24628 ||||||||||| |||||| | | ||| ||| | |||| || | ||| | |||| Sbjct 1447583 TTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAATCTTTCAAATCACTTGATAA 1447524 Query 24629 ATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 24688 ||| | |||||| ||||||||||||| || || || ||||| || | |||||| | || Sbjct 1447523 ATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTC 1447464 Query 24689 ATGATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTT 24731 | ||||| ||| ||| | |||||||||| |||| ||| Sbjct 1447463 AGGATATATAATAGGATGCAATGTAAATCTATTT-GATTCTTT 1447422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718052513440