Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq12 188 5e-43 >seq12 Length=816096 Score = 188 bits (208), Expect = 5e-43 Identities = 392/581 (67%), Gaps = 2/581 (0%) Strand=Plus/Minus Query 97051 TCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACT 97110 ||||| ||||| ||||| ||||||| || || || |||||||| | | | Sbjct 648134 TCAATATGATTATTATAAACATGAGCATTACCCAATACATGTATAAATTCAGCTGCCTGT 648075 Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 || | | || || || |||||| | || |||| ||||||| |||||| || || || Sbjct 648074 AAGTTACATACTTGTGCTATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGA 648015 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 ||||| || || | |||| ||||||||||| | ||| || | ||||| ||| | Sbjct 648014 ACCCCAAGCCCTAAATCACAAGATCTTTGATACATAATACATGATAATTTTCCGTCAAAA 647955 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| |||| || | |||||| || || || ||||||| | |||| ||| Sbjct 647954 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 647895 Query 97291 TTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATC 97350 ||||| ||||||| | |||| |||| || || | | | || ||| || || Sbjct 647894 TTCCATGCACACAAAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATA 647835 Query 97351 TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCT 97410 | |||||||||||||| |||| | |||||| | | | | || |||||| || Sbjct 647834 TTTTTTAATTGATCAACTCCTTTGTCTTTATAATTATCATGCATATCTGTATATTCAGCA 647775 Query 97411 CCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAG 97470 ||||||||||||||||| |||||||||| || || || || ||||||||| | | Sbjct 647774 CCAAAATGCCTCCATTGAAATCCATAAATTGGACCGAGATCATTAACTTCTCTATGAAAT 647715 Query 97471 AAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACACCAGAT 97530 || ||||||||| | ||| | |||||| || ||||| || || | Sbjct 647714 AATTTTCTATTATCTAAAAATTCCCTTGTTCCATTAGCTTCCCATATTCTTACGTTTTTT 647655 Query 97531 GCT-GCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAAC 97589 || ||| | ||| | | || ||||| ||||||||||| |||||||| | || Sbjct 647654 TCTAACAAAGTATTT-CCATTTGTTTCCCCTCTTATAAACCACAATAATTCTTCGATAAT 647596 Query 97590 ACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAAT 97630 |||||| ||||| | | || |||||||| | ||||||| Sbjct 647595 ACCTCTTATAAATAATTTTTTTGTTGTTAATAATGGAAAAT 647555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781979766460