Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq12 304 2e-77 seq11 221 2e-52 seq3 194 3e-44 >seq12 Length=816096 Score = 304 bits (336), Expect = 2e-77 Identities = 525/753 (70%), Gaps = 15/753 (2%) Strand=Plus/Minus Query 205336 GGAAATGGGTTTGGTGTACGTTCTAATTGtttttttAATCCATTAATATGATTAACATAT 205395 ||||| |||| || || | | ||| || | ||||| | | |||||||||| ||| Sbjct 648176 GGAAAAGGGTAAGGAGTTCTATTTAACTGAATCTTTAAGCTTTCAATATGATTATTATAA 648117 Query 205396 ATATGTGCATTACC-AATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGTGC 205454 | ||| |||||||| |||| ||| ||||||||| || | ||| ||| || ||||| Sbjct 648116 ACATGAGCATTACCCAATAC-ATGTATAAATTCAGCTGCCTGTAAGTTACATACTTGTGC 648058 Query 205455 AATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATATC 205514 |||||||| || |||| | ||| ||||| ||| ||||| || || | || | ||| Sbjct 648057 TATCATATATGTAAATATAGAATAGGAAGCAATATTGAATGGAACCCCAAGCCCTAAATC 647998 Query 205515 AGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGTAC 205574 | |||||||||||||| ||||| | |||| | || |||| |||||| || Sbjct 647997 ACAAGATCTTTGATACATAATACATGATA---ATTTTCCGTCAAAAACATAAAATTG-AC 647942 Query 205575 AAAACA-ATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTTA 205633 | || | ||||||||| |||| |||| | || | |||| | |||||| || | Sbjct 647941 ATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACACA 647882 Query 205634 ATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATGTGTTAATTGAT 205693 | || || |||| | ||| | |||||| ||| ||||||||||| | ||||||||| Sbjct 647881 AAATAATTCGTCTACAAGTAGGATCATTTTTAATTAAATTTATAATATTTTTTAATTGAT 647822 Query 205694 CAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGCC 205753 ||| ||||| | | ||||||| || |||||| |||||| |||||||||||| | || Sbjct 647821 CAACTCCTTTGTCTTTATAATTATCATGCATATCTGTATATTCAGCACCAAAATGCCTCC 647762 Query 205754 ATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGttttt 205813 ||||||| ||||||| |||||| | |||| ||| ||||| | || | || | Sbjct 647761 ATTGAAATCCATAAATTGGACCGAGATCATTAACTTCTCTATGAAATAATTTTCTATTAT 647702 Query 205814 ttatatattttaatgatccattttcatcccaaatatggattcctttattttttaGAA--T 205871 || | ||| || |||||| | |||| |||| | | ||| ||| | | || | Sbjct 647701 CTAAAAATTCCCTTGTTCCATTAGCTTCCC--ATATTCTTACGTTTTTTTCTAACAAAGT 647644 Query 205872 ATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAA 205931 |||| ||| ||| || ||||||||| ||||||||||| | ||| ||||| ||| Sbjct 647643 ATTTCCATTTGTTTCCCCTCTTATAAACCACAATAATTCTTCGATAATACCTCTTATAAA 647584 Query 205932 CATTGATTTTGTTGTAAATAATGGAAATGAATCATCTAATTTATATTTCATAGTTAAACC 205991 | | ||||||||| ||||||||||| | |||| ||| ||| ||||||| | | || Sbjct 647583 TAATTTTTTTGTTGTTAATAATGGAAAATATTCATTTAAATTAAATTTCATCATATATCC 647524 Query 205992 ATATACAGTTTTTGTATCTACACCTGTTCTAT--TTTTGGTTATTCTTCCATTAGATAAT 206049 | || | || | | ||||||||||||| | ||| |||| |||||| || | Sbjct 647523 AAATTTACTTAACACACCAACACCTGTTCTATCATCTTGTTTAT--TTCCATGCATTATT 647466 Query 206050 ATTTCTGATATACCTTTTAAATATTGATATTCA 206082 || || ||||| |||||||||||||||||| Sbjct 647465 ATATCATATATAATATTTAAATATTGATATTCA 647433 >seq11 Length=923120 Score = 221 bits (244), Expect = 2e-52 Identities = 189/231 (82%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || ||||| |||||| | || | ||| || Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || ||||||||||||||||||||||| || |||||||| Sbjct 406104 GATACTATTGAAAATGTTAAAGCA-AAAATTCAAGATAAAGAAGGTATTCCCCCTGATCA 406162 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||||||||| ||| | |||||||| |||||||| Sbjct 406163 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 406222 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||||||||||| || |||||||||||| | ||| |||||||||| Sbjct 406223 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGGTAT 406273 Score = 212 bits (234), Expect = 9e-50 Identities = 186/229 (81%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| ||| |||| || ||||| |||||| | || | ||| || Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| ||||| || ||||||||||||||||||||||| || |||||||| Sbjct 406332 GATACTATTGAAAATGTTAAAGCA-AAAATTCAAGATAAAGAAGGTATTCCCCCTGATCA 406390 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | |||||||| |||||||||||||| ||| | |||||||| |||||||| Sbjct 406391 ACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACATTATCTGATTATAA 406450 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||||||||||||| || |||||||||||| | ||| |||| ||| Sbjct 406451 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGT 406499 Score = 206 bits (228), Expect = 4e-48 Identities = 171/206 (83%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 124564 CAGGCAAAACTATAACTATAGAGATTGAAGCAAATGATACAATTTCTAAT-TTAAAACAG 124622 |||| |||||||||||| | || | ||| || ||||| ||| ||| ||||| || Sbjct 405841 CAGGAAAAACTATAACTCTTGATGTCGAACCATCCGATACTATTGAAAATGTTAAAGCA- 405899 Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||||||||||||||| || |||||||||||||| | |||||||| |||||| Sbjct 405900 AAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAA 405959 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 |||||||| ||| | |||||||| |||||||||||||||||||||||||| || ||| Sbjct 405960 CAATTAGAAGATGGCAGAACATTATCTGATTATAATATTCAAAAAGAATCAACCTTACAT 406019 Query 124743 TTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||||||| | ||| |||||||||| Sbjct 406020 TTGGTTTTAAGATTAAGAGGTGGTAT 406045 >seq3 Length=1724855 Score = 194 bits (214), Expect = 3e-44 Identities = 171/211 (81%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| |||| ||| |||| || ||||| || ||| | || ||||| || Sbjct 1545579 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1545520 Query 124598 TGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 ||||| ||| ||| ||||| || |||||||||||||||||||| || || ||||| | Sbjct 1545519 CGATACTATTGAAAATGTTAAAGCA-AAAATTCAAGATAAAGAAGGAATTCCCCCTGACC 1545461 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 ||||||| || |||||||| |||||||||||||| ||| | |||| ||| ||||||| Sbjct 1545460 AACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTATA 1545401 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||||||||||||||||||| || |||||||| Sbjct 1545400 ATATTCAAAAAGAATCAACCTTACATTTGGT 1545370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755451486150400