Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq11 98.7 9e-16 >seq11 Length=923120 Score = 98.7 bits (108), Expect = 9e-16 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GC 118569 |||||| | |||||| || ||||| || | || || ||||||||||| || ||||| | Sbjct 406499 ACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 406440 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || | || ||| || | ||||||||||| | || | | || ||||| || | Sbjct 406439 TAATGTTCTGCC-ATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGG 406381 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || || ||| ||||||| |||||| | ||| | || || | || | ||| Sbjct 406380 GAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGT-TCG 406322 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || || | |||||||||||||||||||| Sbjct 406321 ACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-G 118568 |||| || | |||||| || ||||| || | || || ||||||||||| || ||||| | Sbjct 406272 TACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAG 406213 Query 118569 CTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | || | || ||| || | ||||||||||| | || | | || ||||| || Sbjct 406212 ATAATGTTCTGCC-ATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGG 406154 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTC 118687 || || || || || ||| ||||||| |||||| | ||| | || || | || | || Sbjct 406153 GGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGT-TC 406095 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || | || | ||||| || || | |||||||||||||||||||| Sbjct 406094 GACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433827872666776