Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3 159 5e-34 seq11 158 2e-33 >seq3 Length=1724855 Score = 159 bits (176), Expect = 5e-34 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 146065 TAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATC 146124 || |||||||||||| || |||||||| ||||||||||| || | |||||||| ||| Sbjct 1545366 TATTACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATC 1545425 Query 146125 ATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184 ||||||||||||||||||||||| | |||||| || || || ||||||||||||||||| Sbjct 1545426 TTCTAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATC 1545485 Query 146185 TTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGT 146244 ||| |||||| || ||| || || || |||||||| Sbjct 1545486 TTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGT 1545545 Query 146245 TTTACCTGTTAATGTTTTAATGAATATTTGCATTTT 146280 ||| || ||||||||||| | || ||||||||||| Sbjct 1545546 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 >seq11 Length=923120 Score = 158 bits (174), Expect = 2e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| ||||||||||| || |||||||| ||||||||||| || Sbjct 406042 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 405983 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| ||||||||||||||||||||||| |||||||| ||||| || ||| Sbjct 405982 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 405923 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 405922 ATACCTTCTTTATCTTG 405906 Score = 158 bits (174), Expect = 2e-33 Identities = 117/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | |||||| ||||||||||| || |||||||| ||||||||||| || Sbjct 406270 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406211 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| ||||||||||||||||||||||| |||||||| ||||| || ||| Sbjct 406210 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406151 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 406150 ATACCTTCTTTATCTTG 406134 Score = 152 bits (168), Expect = 8e-32 Identities = 116/137 (85%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| ||||||||||| || |||||||| ||||||||||| || Sbjct 406498 CCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406439 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||||||| ||| ||||||||||||||||||||||| |||||||| ||||| || ||| Sbjct 406438 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406379 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||||||||| Sbjct 406378 ATACCTTCTTTATCTTG 406362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743521957429760