Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 251 7e-62 >seq2 Length=1580255 Score = 251 bits (278), Expect = 7e-62 Identities = 616/914 (67%), Gaps = 31/914 (3%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAAC---TGACAT 15942 |||||||||| ||| | |||||| || | |||||| | | | |||||| |||| Sbjct 1448366 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGAC-- 1448309 Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 |||||||| || |||||| ||||||||||||||||||||||||| ||| || || Sbjct 1448308 -TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1448250 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAA 16059 ||||| ||| ||| |||||||| ||| | | |||| || || || ||| | Sbjct 1448249 ATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAG 1448190 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTA 16118 ||||||||| || |||||||| ||||| || ||| || || | |||||||| | Sbjct 1448189 ---TAATCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCCAA 1448134 Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178 |||| | | || | | ||| | ||| | | |||| | ||| ||||| | | Sbjct 1448133 TTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAA 1448074 Query 16179 TTATATCTCTTACTACA-CTATT--TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || | ||| | | |||||| || | |||| | Sbjct 1448073 CTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAGC 1448017 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || ||||||| ||| | ||||| || || || ||||| || || |||||| | || Sbjct 1448016 AATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAAC 1447957 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| |||||| || || ||| ||| ||| ||| Sbjct 1447956 CATGTAATTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAAT 1447898 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 |||||||| || ||| || || | || ||| | | | |||| || | Sbjct 1447897 ATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGA---ATTTGTATCATTA 1447841 Query 16415 atccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| |||||| |||||| || |||| | | | || || || || |||| Sbjct 1447840 ATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATG 1447782 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 ||||||| ||||||| |||| ||||||| |||| |||| ||||||||| | Sbjct 1447781 GAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGT 1447722 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| ||||| ||||| || | ||||| |||||| |||||| | | ||||| ||| Sbjct 1447721 TTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTAT 1447662 Query 16594 TTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 || |||||| ||||| || || || || ||||| ||||||||||| || |||| Sbjct 1447661 TTCTACTTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTG 1447603 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAACCAG 16711 ||||||| || | | ||||| ||||||| |||||| ||| | || |||| | | Sbjct 1447602 CAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA-AAA 1447544 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 || ||||| |||||||||| | ||||| | |||||||| ||||| |||| ||| Sbjct 1447543 TCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTT 1447484 Query 16772 TTATACATTTTCCA 16785 || || | ||||| Sbjct 1447483 TTGTAAAAATTCCA 1447470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462509236490800