Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq12 201 9e-47 >seq12 Length=816096 Score = 201 bits (222), Expect = 9e-47 Identities = 361/523 (69%), Gaps = 11/523 (2%) Strand=Plus/Plus Query 20037 AAATGAAT---TTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGA 20093 |||||||| |||| |||||||| || ||| ||||| | ||| || | ||||| Sbjct 647547 AAATGAATATTTTCCATTATTAACAACAAAAAAATTATTTATAAGAGGTATTATCGAAGA 647606 Query 20094 GTTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGT-AGAAAAAGGAGTTA 20152 ||||| |||||||| | ||| ||||||| | | |||| ||||||| || | Sbjct 647607 ATTATTGTGGTTTATAAGAGGGGAAACAAATGGAAAT-ACTTTGTTAGAAAAAAACGTAA 647665 Query 20153 AGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACC 20209 || ||| || ||||| | | | |||||||| | | | || |||| | | Sbjct 647666 GAATATGGGAAGCTAATGGAACAAGGGAATTTTTAGATAATAGAAAATTATTTCATA--- 647722 Query 20210 GTCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAAT 20269 | ||| ||| | ||||| | ||||||||||||||||| |||||||| ||||||| Sbjct 647723 GAGAAGTTAATGATCTCGGTCCAATTTATGGATTTCAATGGAGGCATTTTGGTGCTGAAT 647782 Query 20270 ATGTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTA 20329 || || ||| | |||||| | ||||||| ||||||||| ||||| |||| | Sbjct 647783 ATACAGATATGCATGATAATTATAAAGACAAAGGAGTTGATCAATTAAAAAATATTATAA 647842 Query 20330 ATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAG 20389 |||||||||||| | || | ||| |||||||||| || || ||||| | |||| Sbjct 647843 ATTTAATTAAAAATGATCCTACTTGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAG 647902 Query 20390 ATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATA 20449 || | | |||||| || ||||| |||||||| |||| |||||||| ||| | | Sbjct 647903 ATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGACG 647962 Query 20450 ATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCA 20509 |||| || ||| ||||||||| |||| |||| | || || || ||||| |||| Sbjct 647963 GAAAATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGGCTTGGGGTTCCATTCA 648022 Query 20510 ATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGT 20552 ||||||| ||| | | |||| |||||||| ||||| || Sbjct 648023 ATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 648065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399181674503710