Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq2 232 6e-56 >seq2 Length=1580255 Score = 232 bits (256), Expect = 6e-56 Identities = 617/930 (66%), Gaps = 21/930 (2%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 ||||||||| || || ||||| || | || | | | | || ||||| || ||| Sbjct 1448365 TAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1448306 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||||||||||||||| || ||||| |||| | ||||| ||| Sbjct 1448305 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1448246 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 || ||| |||||||||| | || ||| |||||| ||| |||| | ||||||| Sbjct 1448245 ATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAAT 1448186 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 14094 ||||| |||| || ||||||||||||||||| || || ||||||| || |||| | Sbjct 1448185 CTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 1448127 Query 14095 TACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 ||| | | ||| || |||| | | |||| || || || || | ||| Sbjct 1448126 -ACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATAT 1448068 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAA 14211 | || || ||| | | | | |||||| | || ||||||| || ||| Sbjct 1448067 TTTGAACAACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAAATTAAGCAATTAAA 1448010 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCA 14270 |||| ||| || || |||||||| ||||| | ||| || ||||||||| || || | Sbjct 1448009 ATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAA 1447950 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | || | ||||||| |||||||| |||||| || ||| ||| ||||| || | Sbjct 1447949 TTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATACCTT 1447891 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCCA 14388 | || ||| || | | || ||| |||| || ||||| || ||||| Sbjct 1447890 CTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTAATCCA 1447836 Query 14389 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAA 14448 ||| ||||||| | ||| ||||| || || |||||||||||| ||||| Sbjct 1447835 TTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAATAA 1447776 Query 14449 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 14508 || | | | ||||| | | ||| || |||| || | ||| ||||| ||||||| Sbjct 1447775 ATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTCAGA 1447716 Query 14509 GTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14568 ||||| ||||| | |||||| |||||| |||||| | | ||||| || ||| Sbjct 1447715 ATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCTAC 1447656 Query 14569 CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||| ||||| | ||||||||||| ||||| |||||||| ||||||||||| Sbjct 1447655 TTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAAAAAA 1447596 Query 14629 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC--TGAGTTTTTTCCAATCGGCT 14686 ||| || | | ||| ||||| | || || | || | | | ||||| |||| Sbjct 1447595 TGCTAAAACATGTTTTATAAAATGTTTTTCAT--TTACATTTAATTTTTCAAAATCTTTC 1447538 Query 14687 AAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATAC 14746 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| || Sbjct 1447537 AAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAA 1447478 Query 14747 ATTACCCATATTTCTTTATATAATATAGGA 14776 | ||| | ||| ||||| |||||| Sbjct 1447477 AAATTCCAAACTTCAGGATATATAATAGGA 1447448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342717985040