Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq11 125 5e-24 seq3 122 7e-23 >seq11 Length=923120 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | || ||| | |||| || | ||||||||||||||||| || || || | Sbjct 406498 CCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406439 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | |||||| |||||||| || ||| | || | |||||||||||| ||| Sbjct 406438 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406379 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACC-TGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| ||||| ||||| |||||| | | | | ||| ||| || || ||| Sbjct 406378 ATACCTTCTTTATCTTGAATTT-TTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406320 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || ||| |||| || || ||||||||||||||||| ||||| Sbjct 406319 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406272 Score = 120 bits (132), Expect = 2e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| | | |||||| |||||||| || Sbjct 406240 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 406181 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | |||||||||||| ||| | ||||| ||||| ||||| |||||| Sbjct 406180 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTT-TTGCTTT 406122 Query 18249 ACC-TGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGT 18307 | | | | ||| ||| || || ||| |||| || ||| |||| || || ||||| Sbjct 406121 AACATTTTCAATAGTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGT 406062 Query 18308 TTTTACAAAAATTTGCAT 18325 |||||||||||| ||||| Sbjct 406061 TTTTACAAAAATCTGCAT 406044 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Minus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 ||||||||||||||||| || || || | | |||| | | |||||| |||||||| || Sbjct 406012 GTTGATTCTTTTTGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCA 405953 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTT 18247 ||| | || | |||||||||||| ||| | ||||| ||||| ||||| |||||| Sbjct 405952 GCAAAAATTAATCTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTT-TTGCTT 405895 >seq3 Length=1724855 Score = 122 bits (134), Expect = 7e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18116 TACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTC 18175 ||||| || | ||||||||||||||||| || || || | | ||| | | |||||| Sbjct 1545369 TACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTC 1545428 Query 18176 CAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGC 18235 |||||||| || ||| | || ||||||||||| || ||| | ||||| ||||| Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 18236 AATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 ||||| |||| || || | | ||| ||| || || || |||| ||||| ||| Sbjct 1545489 AATTT-TTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTT 1545547 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 | ||||| |||||||||||||| ||||||||||| Sbjct 1545548 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1545581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379341790084110