Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 100 3e-16 seq11 84.2 2e-11 >seq3 Length=1724855 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| || ||||| || | || || ||||| ||||| | || |||||||| Sbjct 1545581 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCA 1545522 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | | | |||| || ||| | ||| || || ||||| | || || ||| Sbjct 1545521 TCCGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGAATTCCCCCTGAC 1545462 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | ||||| || ||||| ||||| || ||||| | ||| | |||||| Sbjct 1545461 CAACAAAGACTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGATTAT 1545402 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTA 31402 || |||||||||||||| || | ||| ||||| Sbjct 1545401 AATATTCAAAAAGAATCAACCTTACATTTGGTA 1545369 >seq11 Length=923120 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||| || | || || ||||| || || | || || ||||| ||| Sbjct 406044 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406103 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| || || ||||| | || || || || Sbjct 406104 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406163 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | |||| || ||||| ||||| || ||||| | || || | | |||||||| Sbjct 406164 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAAC-ATTATCTGATTATAA 406222 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||||||||| || | ||| |||| | ||| | || || |||| Sbjct 406223 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGTGGTA 406272 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| ||||| || | || || ||||| || || | || || ||||| ||| Sbjct 406272 ATGCAGATTTTTGTAAAAACATTAACTGGAAAAACCATAACTCTTGATGTCGAACCATCC 406331 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | |||| || ||| | ||| || || ||||| | || || || || Sbjct 406332 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATTCCCCCTGATCAA 406391 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | |||| || ||||| ||||| || ||||| | || || | | |||||||| Sbjct 406392 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAAC-ATTATCTGATTATAA 406450 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||||||||||| || | ||| |||| | ||| | || || ||| Sbjct 406451 TATTCAAAAAGAATCAACCTTACATTTGGTTTTAAGATTAAGAGGAGGT 406499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763736545760