Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 387 2e-102 seq2 181 1e-40 >seq11 Length=923120 Score = 387 bits (428), Expect = 2e-102 Identities = 996/1503 (66%), Gaps = 27/1503 (2%) Strand=Plus/Minus Query 62375 ATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62434 ||| || || || || |||||| ||| ||||| | | | |||||| ||||| || Sbjct 449384 ATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGTAAATGTTACTTGT 449325 Query 62435 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62494 ||| ||||| | || |||||||||||||||||||| | |||||| || || |||||||| Sbjct 449324 ATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 449265 Query 62495 TGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCC 62552 ||| | || || | |||||| | || | | | || ||||| | ||||| ||| Sbjct 449264 TGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTTTTAATAAATCC 449207 Query 62553 CAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGTAGAATACCGTTA 62609 |||| |||| | ||| || | |||||| || || | Sbjct 449206 CAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTGG 449147 Query 62610 CTGGC-GTACGATCCTACATATGTATCATATGGTCCTTC--CTTCTCAGCTAGTTTACAA 62666 || || | || | ||| ||||| |||||||| || | ||| | |||| || | | Sbjct 449146 CTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT--GCTAATTCAACA 449090 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT 62726 | ||||| || | ||||| || || ||||| || | ||||||| |||| ||| Sbjct 449089 GACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAATTCTTTAGCT 449030 Query 62727 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62786 || ||| ||||||| |||| || ||||| | || ||||||||||| || || Sbjct 449029 TCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCT 448970 Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTA 62846 || || ||||||| ||| || ||||| || ||||||||||| ||| || |||||||| Sbjct 448969 ATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAATTT 448910 Query 62847 ATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGA 62906 | || |||||||||| | |||||| ||| | ||| | ||| | | ||| | Sbjct 448909 CTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTTTTA 448850 Query 62907 AAATCAAATCGCCCAT-----CTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTA 62960 |||| |||| | |||| | |||| | ||||||| || |||| |||| Sbjct 448849 AAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCCAAATTA 448790 Query 62961 CACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACAC 63020 || || ||||| |||| || | |||| ||||| ||| || | |||||||| Sbjct 448789 CAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATAAGTTACTACAT 448730 Query 63021 TTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATG 63080 || || ||||||||||||| ||||||| || || || ||||| ||||| | || Sbjct 448729 TTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTTTATATAACATA 448670 Query 63081 AATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTT 63140 |||| |||||||||||| ||| || || || || ||| | || | || Sbjct 448669 TATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAATCTTGTGCAAGG 448610 Query 63141 ATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCT 63200 | | | ||| | ||||| ||| ||| ||||| || ||| || |||||| Sbjct 448609 ACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAACTTTTCAAATTCGTCT 448550 Query 63201 CCCCAAACATTGTCC-AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTC 63259 |||||| ||| | || | |||||||||| |||||||| || | ||| | | | Sbjct 448549 CCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTTTTTATT 448491 Query 63260 ATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGT 63319 || || |||| ||||||||| | |||||| | ||||| ||| ||||| ||||| | Sbjct 448490 TTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCTCGAGC 448431 Query 63320 TCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATG 63379 ||| ||| || || || ||| ||| | | ||| | || | | |||||| ||||| Sbjct 448430 TCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATG 448371 Query 63380 CCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTA 63439 ||| || || | |||| || | | ||| | ||| ||| || ||||||| || Sbjct 448370 CCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCTTGATCTACATA 448311 Query 63440 TCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 || || || | |||| |||| || |||||||||| | ||| |||||||||||||| || Sbjct 448310 CCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGATATACCATTAGT 448251 Query 63500 ACCGGAGATAT-AGCCTCCACTG-GCACGAATATTACTAATTGATAGACCTATTCCCCCT 63557 || |||| || | ||| | | |||| | | | ||||| || ||| Sbjct 448250 TCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAACTCCTATGCCGCCT 448193 Query 63558 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCA 63617 || ||||| || || || ||| ||||||| || ||| | || ||||| || ||| Sbjct 448192 GCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTTCAATAGAATCT 448133 Query 63618 TCGATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAA 63676 |||| | ||| ||||||||| |||||||| | || | ||||| | |||||| Sbjct 448132 GATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGGGTTCCTGAATTAAA 448074 Query 63677 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGC 63736 ||| || || | ||| || || || |||||| ||| | || || || || || | ||| Sbjct 448073 TAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATATGTTTCTAAAGC 448014 Query 63737 TGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 63796 | || | ||| | ||||||||| | || || | |||||| | || ||||| | Sbjct 448013 TTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAATGTTGAGGACG 447954 Query 63797 TTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 63856 ||||| |||||| || || ||| || || || ||| ||| ||||||||||| ||||| Sbjct 447953 TTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTTTTAAATCCAAA 447894 Query 63857 ATA 63859 ||| Sbjct 447893 ATA 447891 >seq2 Length=1580255 Score = 181 bits (200), Expect = 1e-40 Identities = 603/927 (65%), Gaps = 17/927 (2%) Strand=Plus/Minus Query 33226 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAA--TGATTGTCTTCTT-GAGACATAA 33282 |||| ||| |||||| ||| || |||||||| | || | ||||| ||| ||||| Sbjct 1448376 TTATATTTTCTTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1448317 Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1448316 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1448257 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATT 33402 |||| ||||| ||| ||| ||||| || || | ||| ||| || ||| | Sbjct 1448256 ATATTAAATCCATCCAATTAAATGGATTTTTAGAAT-GAAAAACTTTAGAACACCCTAAA 1448198 Query 33403 CAGAA-ATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | |||||||| || || ||||| |||||| ||| | | |||||||| Sbjct 1448197 CATTCTAGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCATT 1448138 Query 33462 CCTATGAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCAT 33519 || || | | | ||| |||| |||| || |||| | || | || || | Sbjct 1448137 CCAATTAAATCACATGGTAAAGATTCACA--AATAAATGATCTCTCTACTTCAACTGCTT 1448080 Query 33520 TTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGT---AATAAATGTTTAAACA 33576 | | | ||| | ||| |||||| | || | |||||| || | | Sbjct 1448079 CTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAA 1448023 Query 33577 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACG 33636 | || || ||||| || ||||| || ||||| ||||||||||| ||| ||| | Sbjct 1448022 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 1447963 Query 33637 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAA 33696 | | || | | | | ||||||| |||||| || | | || ||| || Sbjct 1447962 TTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAA 1447903 Query 33697 AGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 33756 | || || |||||||| ||| || | || ||| || || || | |||| Sbjct 1447902 ATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTATCAT 1447843 Query 33757 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 33816 ||||| || |||||| || || ||||||| || || |||| || |||| Sbjct 1447842 TAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCAT 1447783 Query 33817 TAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACA 33876 || | || |||| || |||||||| |||| ||||||| || | |||||| Sbjct 1447782 GGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATG 1447723 Query 33877 TTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAA 33936 |||| ||||| || ||||||| || || ||||| || || | | || || | | Sbjct 1447722 TTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTA 1447663 Query 33937 TCTGCACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 | | |||||| | ||||| | || || |||||||| |||||||||||||| ||| Sbjct 1447662 TTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTTGCT 1447604 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 |||||||| || || |||||||||||||||| |||||| | | ||| ||| | || Sbjct 1447603 GCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAA 1447544 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 || || | ||| | |||| ||| | |||||| ||||||||||||| || || || ||| Sbjct 1447543 TCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTT 1447484 Query 34116 TTATACATATTCCAGATGTCATGATAT 34142 || || | |||||| | ||| ||||| Sbjct 1447483 TTGTAAAAATTCCAAACTTCAGGATAT 1447457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629813836839840