Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq11 580 1e-160 seq2 260 1e-64 >seq11 Length=923120 Score = 580 bits (642), Expect = 1e-160 Identities = 1165/1702 (68%), Gaps = 44/1702 (3%) Strand=Plus/Minus Query 36937 TGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCC 36996 ||||| || || |||| | ||| || ||||| || | |||| ||||| || ||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 36997 CAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAA 37053 ||||| |||||||| | || ||| | | | |||| || ||| || ||| | | Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATATATTGGACACTT 449456 Query 37054 CCATTATGTAACAC--AATTGTATTCTTTATGTCATTATTCCACATATTTCTACTTATTA 37111 ||||| || | || |||||| | || || || | || ||||| | |||| | | Sbjct 449455 CCATTGTG-AGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 37112 GTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTAT 37171 | ||| | || | || ||||||||||| || || ||| |||||| | ||| | Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 37172 ATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATG 37231 | || || || ||||||||||||| || |||||||| | || ||||| || || || | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 37232 CAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTT 37291 | || ||||| ||||||| ||||| |||||| ||||||||| | | ||| | |||| Sbjct 449277 CTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTT 449218 Query 37292 TTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAAC----CACATATCATATTGT 37347 ||| | || ||||||||| | || | || | |||| | ||||||||| ||||| Sbjct 449217 TTAATAAATCCCAATCCCA-ATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 449159 Query 37348 AGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCT 37407 | || |||| || |||||| | | ||||||| ||||| || || | | || ||| Sbjct 449158 AATATTCCTTGGCTTGCTGGACTACCCTTATATGATTCATATGGACCATGTACTTGTGCT 449099 Query 37408 AGTTCGCAACTAGA---TTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 | ||| ||| ||| ||||| || |||||||| ||||| || || ||| | ||||| Sbjct 449098 AATTC--AAC-AGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTT 449042 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 ||| ||| ||||| || || ||| ||| | || | ||||| ||| || || Sbjct 449041 AATTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 448982 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || || || || || || || |||| ||| | ||||| ||| | | |||| | | | Sbjct 448981 CCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATT 448922 Query 37585 GGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATT 37644 || |||||||| | || || ||||||| || |||| || | ||||| ||||| || Sbjct 448921 GGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATC 448863 Query 37645 CTCAACTTGTCGAACAT-AAATACGTTATT------ATTAACAAATTTACTCAACGAAAT 37697 | | || | || || |||| | || || || ||||||||||| || | ||| Sbjct 448862 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 448803 Query 37698 AGATCCTAGATTACATACAGCAACTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTAC 37756 || | | |||||| ||||| |||||||| || | | ||| || || || || Sbjct 448802 TGAAGCCAAATTACAAACAGCTACTTCATCAG-GTGAGGTGTATTCAATTATTTCACAAC 448744 Query 37757 AGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAAT 37816 | | ||||| || |||||||||| ||||| ||||||| ||||| ||| || | || Sbjct 448743 ATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCAT 448684 Query 37817 CTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATA 37876 ||||||||| ||||| || || ||| |||||| | | |||| ||||| Sbjct 448683 CTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATA 448624 Query 37877 AACTTCTTGCTTTAACGATCGCTTTAAttt-----ttttCTTTGTTTCGTATTCTATATA 37931 || ||||| | || || | ||| || ||||||| ||| |||| | |||| Sbjct 448623 AA--TCTTG-TGCAAGGACTGTTTTTTTTCCTAAATTTTCTTC--TTCATATTTTGTATA 448569 Query 37932 TAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACAT 37991 ||| || | ||| || | ||||| || | ||| ||||||||||| |||||||| Sbjct 448568 TAACTTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACAT 448509 Query 37992 TAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGC 38051 || || ||| | || || || || ||| | || ||||||||||||||||||||| | || Sbjct 448508 TAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGC 448449 Query 38052 AGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAA 38111 | |||||||||| | ||| ||||||| || || ||| |||||||| || ||| Sbjct 448448 ATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAA 448389 Query 38112 ATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATC 38171 || || ||||| | |||||||| |||||||| | | | | |||| |||||| | Sbjct 448388 TTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCC 448329 Query 38172 ACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACC 38231 || || |||| | ||| || | || | |||| | | |||||||| || |||| ||| Sbjct 448328 TCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACC 448269 Query 38232 ATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGA 38291 ||| ||| | || || | || ||||||| | || | ||| ||||| ||| | | Sbjct 448268 ATTTGATATACCATTAGTTCCTCTAATATAAGAATTCTGACCTCTTATAT--CTTGTACA 448211 Query 38292 -CAA-TCCTATTCCACCTGCATGTTTTGATATT-AAAGCGCATTGTTTTAACGTATCAAA 38348 ||| |||||| || ||||| |||||| || | ||||| ||||||||||| || ||||| Sbjct 448210 GCAACTCCTATGCCGCCTGC-TGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAA 448152 Query 38349 TATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAA 38408 ||||||||| ||| || || || | || || ||||||| |||||||| || Sbjct 448151 TATACCTTCAATAGAATCTGATTTCATAGATAATAGAAAACAAGATGACATTTGCGGTCG 448092 Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468 ||| ||||| | ||||||||||| || | |||||| |||| |||||| |||| | Sbjct 448091 TGGGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAA 448032 Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528 || ||||||||||| | | || | |||| | ||||| || | || || ||||| Sbjct 448031 ATGATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCAT 447972 Query 38529 TAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTC 38588 || | |||||| || | ||| || ||||||||||| | | || ||| ||| ||| Sbjct 447971 TAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTC 447912 Query 38589 TAATGTTTTTATTCCAAAATAA 38610 ||| ||||| | |||||||||| Sbjct 447911 TAAAGTTTTAAATCCAAAATAA 447890 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| | || ||| | || ||||| | || || ||| ||| Sbjct 449934 TCAACTGTAAATTTAATAGCGTCTGTTGCTGCTTGAGTTCTTAAGTAGTATGCTCCGGTT 449875 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 ||||| ||| | ||| || |||||||||||||||| | ||||||| ||||||| || Sbjct 449874 TTTAGACCCTTTTCCCAACCATAAAAATGCATACTGGATAATTTTGCGAATGTAGGCTTT 449815 Query 36910 TCTATATATATTGTCATTGATTGA 36933 | |||||| || | | ||| ||| Sbjct 449814 TGTATATAGATGTTTAGTGACTGA 449791 >seq2 Length=1580255 Score = 260 bits (288), Expect = 1e-64 Identities = 654/971 (67%), Gaps = 31/971 (3%) Strand=Plus/Minus Query 11245 atta-aattatttattcaactttataaaaattat---taattaaaaatctatatccgtag 11300 |||| |||| ||||| ||||||| | | ||||| | ||||||||| ||| | || Sbjct 1448405 ATTATAATTTTTTAT-CAACTTTTTTTATATTATATTTTCTTAAAAATCAGTATTCAAAG 1448347 Query 11301 aaaata--tattCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCG 11358 |||||| | |||| |||||| |||||| ||||||||| || ||||| Sbjct 1448346 AAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGA--CTTTTGATAATCTGCAACTCT 1448289 Query 11359 TCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATT 11418 | ||| || ||||| || || |||| || ||||| | ||||| | |||| ||||| Sbjct 1448288 TTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCCATCCAATTAAATGGATT 1448229 Query 11419 ATATACATTGAAGA-CTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATT 11477 | || | |||| | |||| ||| ||||| | || ||||||||| || || |||| Sbjct 1448228 TT-TAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAATCTATCAGCAACAAATT 1448170 Query 11478 CTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTG 11537 | ||||| |||||||| | | ||||||| || || | ||| || | || | | Sbjct 1448169 CAATATATTGAGACATAAGTCTTGAATTCATTCCAATTAAATCACATGGTAAAG--ATTC 1448112 Query 11538 TCAAA-AACTCCTTT-TCTATATTAACCGCATCAATGATTATCGACGTT--ATAACTTCC 11593 |||| || | | | |||| | ||| || || | | ||| | || | |||||| Sbjct 1448111 ACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTAT--ATTTTGAACAACTTCT 1448054 Query 11594 TTAGATGGTGGATGT---AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAA 11650 | | | | || | |||||| || | ||||| || ||||||| ||||| | Sbjct 1448053 TCTGGTAATTTATTTTCTAATAAAC---TATAAATTAAGCAATTAAAATCAGTATGTAGA 1447997 Query 11651 CCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA-TCAATCCTCGttt 11709 ||||| ||||| || |||| ||||||| ||||||||| || | | | || | |||| Sbjct 1447996 CCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTTT-GTTT 1447938 Query 11710 ttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAA 11769 ||| | |||||| || ||| ||| ||| ||| ||||| || || ||| |||| Sbjct 1447937 TTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATACCTTCTACACATGCATT 1447878 Query 11770 TGCTACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAG 11828 || || | |||||| || | | |||| | | |||||||| ||||| | Sbjct 1447877 AGCCACAATTCTTTCAGCAAAAGAATTTGTATCATTA-ATCCATTTAGCAGCCCATAATG 1447819 Query 11829 CTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATAT 11888 |||| ||||||| | || |||| ||||| | ||||||| | ||||| | | Sbjct 1447818 CTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAATAAATTTAACCTTTCTTTTT 1447759 Query 11889 TATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAG 11948 |||| | | ||| |||| |||||||||||||| |||| ||||| |||||||| | || Sbjct 1447758 CATCTTTAATATAATTATCGATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAG 1447699 Query 11949 CTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTT 12008 |||||||||| ||| || | ||| || | ||| | | | ||||| || Sbjct 1447698 CTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCTAC-TTCTCTTAAAAATTTA 1447640 Query 12009 C-CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTT 12067 | || ||||| || ||| || |||||||| | |||||||||||||| | ||||||| Sbjct 1447639 CTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAAAAAATGCTAAAACATGTTTT 1447580 Query 12068 ATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCT 12127 ||||| | |||||| | | | ||||||| || |||| | ||||| |||||||||| Sbjct 1447579 ATAAAATGTTTTTCATTTACATTTAATTTTTCAAAATCTTTCAAATCACTTGATAAATCA 1447520 Query 12128 ACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGA 12187 | ||||||| | |||||||| || | | || ||| || | ||||| | ||| || Sbjct 1447519 ATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTCAGGA 1447460 Query 12188 TACTTAATAGG 12198 || ||||||| Sbjct 1447459 TATATAATAGG 1447449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468522000564320