Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 390 1e-103 seq2 199 5e-46 >seq11 Length=923120 Score = 390 bits (432), Expect = 1e-103 Identities = 1117/1699 (66%), Gaps = 40/1699 (2%) Strand=Plus/Minus Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 65040 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 65095 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 449457 Query 65096 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTA 65154 |||| | || || ||| | | || || || |||| ||| || ||| || | Sbjct 449456 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 65155 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 65214 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 65215 AAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 65274 |||| ||||| ||||| ||||| | ||| |||||||||||||||||||| | |||||| | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 65275 CAGTCGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACCGTATGTTCTGATTTTATC 65332 | || ||||||||||| | || || | |||||| | || | | | || ||||| | Sbjct 449277 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTT 449220 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTG 65389 ||||| ||||||| |||| | ||| | ||| Sbjct 449219 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 449160 Query 65390 TAGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTC--CTTCTC 65446 || || || | || || | || | ||| ||||| || ||||| || | ||| | Sbjct 449159 TAATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGT- 449102 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 |||| |||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 449101 -GCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 449043 Query 65507 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564 || |||| ||||| ||| | || ||||||| |||| || ||||| | |||||| Sbjct 449042 TAATTCTTTAGCTTCGTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 448985 Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624 |||||||| || || || || ||||||| ||| || ||||| || ||||||||||| | Sbjct 448984 AATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTA 448925 Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684 || || |||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 448924 ATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 448865 Query 65685 TCCTTCAGTTTGAGAAAATCAAATCGCTCAT-----CTATTA-CAAACATGTTCAATGCA 65738 || | | ||| ||||| |||| | | |||| | |||| | |||||| Sbjct 448864 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 448805 Query 65739 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 65798 | || |||| ||||||||| ||||| |||| || | |||| ||||| ||| Sbjct 448804 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 448745 Query 65799 CAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 65858 || | |||||||| || || ||||||||||||| ||||||| || || || ||| Sbjct 448744 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 448685 Query 65859 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 65918 || ||||| | || |||| |||||||||||| ||| || || || || ||| Sbjct 448684 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 448625 Query 65919 ACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAAT 65978 | || | || | | | ||| | |||||| ||| ||| |||||| || Sbjct 448624 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCC-AATCCAGGACATTCATCCGGACACATCAA 66037 ||| || |||||||||||| ||| | || || |||||||||| |||||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAA 448506 Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 | ||| | | | || || |||| ||||||||| | |||||| | ||||| ||| Sbjct 448505 AGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 448446 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 ||||||||||| | ||| ||| || || || ||| ||| | | ||| | || | Sbjct 448445 AAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 448386 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | |||||| ||||||| || || | |||| || | | ||| | ||| ||| Sbjct 448385 AAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCC 448326 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 || ||||||| || || || || | |||| |||| || |||||||||| | |||||| Sbjct 448325 ACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATT 448266 Query 66278 GGATGTACCATTGGTCCCGGAGATATA--GCTTC-CACTTGCACGAATATTACTAATTGA 66334 ||| ||||||| || || ||||| ||| || | | |||| | | Sbjct 448265 TGATATACCATTAGTTCCTCTAATATAAGAATTCTGAC---CTCTTATATCTTGTACAGC 448209 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||||| || ||||| ||||| || || || ||| ||||||| || ||| | || Sbjct 448208 AACTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATAT 448149 Query 66395 GCCCTCTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 66453 || || ||| ||| |||| | ||| ||||||||| |||||||| | || Sbjct 448148 ACCTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTG 448090 Query 66454 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 66513 ||||| | ||||||||| || || | ||| || || || |||||| ||| | || || Sbjct 448089 GGGTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAAT 448030 Query 66514 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 66573 || || || | |||| || | ||| | ||||||||| | || || | ||||| Sbjct 448029 GATATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTA 447970 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 | | || ||||| | ||||| || || || || ||| || || || ||| ||| | Sbjct 447969 ATAAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTA 447910 Query 66634 AAGTTTTAAAACCAAAATA 66652 |||||||||| |||||||| Sbjct 447909 AAGTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 199 bits (220), Expect = 5e-46 Identities = 633/967 (65%), Gaps = 26/967 (3%) Strand=Plus/Minus Query 35802 TTATGTTTCTTTAAAAATCAACATCTAGAGAAAAA--TGATTGTCTTCTT-GAGACATAA 35858 |||| ||| |||||||||| || | |||||| | || | ||||| ||| ||||| Sbjct 1448376 TTATATTTTCTTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1448317 Query 35859 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATG 35918 | || ||||| || || | || | |||||| || ||||| ||||| |||| ||| | Sbjct 1448316 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1448257 Query 35919 ATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAA-- 35976 |||| ||||| ||| |||||||| || || | ||| ||| | | || || Sbjct 1448256 ATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAAC 1448197 Query 35977 -TTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 36035 ||| | |||||||| || |||||||| |||||| ||| | | |||||| Sbjct 1448196 ATTCT---AGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCA 1448140 Query 36036 TTCCTATAAGTTTAACTGG--AAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGC 36093 |||| || | | | ||| |||| |||| || |||| | || | || || Sbjct 1448139 TTCCAATTAAATCACATGGTAAAGATTCACA--AATAAATGATCTCTCTACTTCAACTGC 1448082 Query 36094 GTCTGTTATAATAGATATT--ACTGTTTCTTCACTCGGTGGATAC---AATAAATGTTTA 36148 ||| ||| | || || || || |||||| | || |||||| || Sbjct 1448081 TTCT-TTA-ACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TA 1448027 Query 36149 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 36208 | || || || ||||| |||||||| || ||||| ||||||||||| || | Sbjct 1448026 TAAATTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTA 1447967 Query 36209 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 36268 || || | || | | | | ||||||| |||||| || | ||| |||| Sbjct 1447966 AATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCA 1447907 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 ||| || || |||||||| ||| || | || ||| || || || | Sbjct 1447906 CTAAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTA 1447847 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 |||| ||||| || |||||| || || ||||||| || || | || ||| Sbjct 1447846 TCATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATA 1447787 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 |||| || | || |||| || |||||||| ||| |||| || || | |||| Sbjct 1447786 GCATGGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTA 1447727 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 || |||| ||||| || ||||||| || |||||||| || || | | || || Sbjct 1447726 TATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCA 1447667 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACT 36567 | || | ||||||| | ||||| | || || |||||||| |||||||| ||||| Sbjct 1447666 ATTATTTCTACTTCTCTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACT 1447608 Query 36568 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATT 36627 ||||||||||| || || |||||||||||||||| |||||| ||| ||| ||| | Sbjct 1447607 TGCTGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTC 1447548 Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 |||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || Sbjct 1447547 AAAATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGC 1447488 Query 36688 CTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTG 36747 ||||| || | |||||| | ||| ||||| ||| ||| | ||||||| |||| Sbjct 1447487 TTTTTTGTAAAAATTCCAAACTTCAGGATATATAATAGGATGCAATGTAAATCTA-TTTG 1447429 Query 36748 ATTTTTT 36754 ||| ||| Sbjct 1447428 ATTCTTT 1447422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658168867417520