Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 479 4e-130 seq2 181 2e-40 >seq11 Length=923120 Score = 479 bits (530), Expect = 4e-130 Identities = 1139/1697 (67%), Gaps = 36/1697 (2%) Strand=Plus/Minus Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 78919 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 78974 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 449457 Query 78975 TCCACCATCTGCCAT-AATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 79033 |||| | || || ||| | | || || ||||||| ||| || ||| || | Sbjct 449456 TCCATTGTGAGCAATTAATTGTTGT-TTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 79034 AAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGT 79093 | || | | | ||| ||||| || || ||||| ||| ||||| | | | || Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 79094 AAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATG 79153 |||| ||||| ||||||||||| | ||||||||||||||||||||||| | |||||| | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 79154 CCGTTGGCATAGGTGCCACCAATAAACT--ATTTCTAAGACC--GTATGATCTGATTTTA 79209 | |||||||||||||| | || || | |||||| | || ||||| || ||||| Sbjct 449277 CTGTTGGCATAGGTGCTA--AAAGAAGTGAATTTCTTAATCCATGTATG--CTTATTTTT 449222 Query 79210 TCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATAT 79266 | ||||| | |||||||||||| | | || ||||||| | |||| || Sbjct 449221 TTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAAT 449162 Query 79267 TGTAGAATACCGTTACTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTC 79325 |||| || || | || || | | | ||| | |||| |||||| || || | || Sbjct 449161 TGTAATATTCCTTGGCTTGCTGGACTACCCT-TATATGATTCATATGGACCATGTACTTG 449103 Query 79326 GGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATT 79385 ||||||||| | | ||||| || | ||||| || || || || || | ||||| Sbjct 449102 TGCTAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATT 449043 Query 79386 GAGATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 79444 | |||| ||||| | | | ||| ||||||| |||| || ||||| | ||||||| Sbjct 449042 TAATTCTTTAGCTTCGTCAGAT-TCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 448984 Query 79445 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAA 79504 ||||||| || || || || ||||||| ||| || ||||| || ||||||||||| || Sbjct 448983 ATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAA 448924 Query 79505 TAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCAC-A 79563 | || |||||||| | || |||||||||| | ||| || | || || ||| | | | Sbjct 448923 TTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATA 448865 Query 79564 TCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTATTA-CAAACATGTTCAACGCG 79617 || | || ||| ||||| |||| | | |||| | |||| | || || Sbjct 448864 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCA 448805 Query 79618 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTG 79677 | || |||| ||||||||| ||||| |||| || | |||| ||||||||| Sbjct 448804 ATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAA 448745 Query 79678 CAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 79737 || | ||||||||| ||||| ||||||||||||| ||||||| || || || ||| Sbjct 448744 CATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCA 448685 Query 79738 TCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 79797 || ||||| | || | || |||||||||||| ||| || || || || ||| Sbjct 448684 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCAT 448625 Query 79798 ACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAAT 79857 | || | || | | | || | |||||| ||| |||| ||||||||| Sbjct 448624 AAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAAC 448565 Query 79858 CGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAAC 79917 ||| || |||||||||||| || ||| || |||||||| | ||||||||| || Sbjct 448564 TTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAA 448505 Query 79918 GACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA 79977 | ||| | | || || ||||||| ||||||||| | |||||| | ||||| ||| | Sbjct 448504 GTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAA 448445 Query 79978 AATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 80037 |||| ||||| | ||| || || || || ||| ||| | | ||| | || | Sbjct 448444 AATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCA 448385 Query 80038 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCT 80097 | |||||| |||||||| || || | |||| || | | ||| || ||| ||| Sbjct 448384 AAAATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCA 448325 Query 80098 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 80157 || ||||||| || || || || | |||| |||| || |||||||||| | |||||| Sbjct 448324 CCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTT 448265 Query 80158 GATGTACCATTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTGATA 80215 ||| ||||||| || || |||| || | ||| | | |||| | | | Sbjct 448264 GATATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAA 448207 Query 80216 GACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGC 80275 ||||| || ||||| ||||| || || || ||| ||||||| || ||| | || | Sbjct 448206 CTCCTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATAC 448147 Query 80276 CCTCTATGCTATCATCAATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 | || || ||| |||| | ||| ||||||||| |||||||| | || Sbjct 448146 CTTCAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGG 448088 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||||||||| || || | ||| || || || |||||| ||||| || || Sbjct 448087 GTTCCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGA 448028 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || || | |||| ||| | ||| | ||||||||| | | || | |||||| Sbjct 448027 TATGTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAAT 447968 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 | || ||||| | ||||| || || ||||| ||| || || || ||| ||| ||| Sbjct 447967 AAATGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAA 447908 Query 80515 GTTTTAAAACCAAAATA 80531 |||||||| |||||||| Sbjct 447907 GTTTTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 181 bits (200), Expect = 2e-40 Identities = 602/928 (65%), Gaps = 19/928 (2%) Strand=Plus/Minus Query 49604 TTATGTTTCTTTAAAAGTCAACATCTAGAGAAAAA--TGATTATCTTCTT-GAGACATAA 49660 |||| ||| |||||| ||| || | |||||| | || | ||||| ||| ||||| Sbjct 1448376 TTATATTTTCTTAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAA 1448317 Query 49661 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 49720 | || ||||| || || | || | |||||| || ||||| |||||||||| || | Sbjct 1448316 CACCTGACTTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAG 1448257 Query 49721 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAA-- 49778 |||| ||||| ||| ||| ||||| || || | ||| ||| | | || || Sbjct 1448256 ATATTAAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAAC 1448197 Query 49779 -TTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCA 49837 ||| | |||||||| || |||||||| |||||| ||| | | |||||| Sbjct 1448196 ATTCT---AGTAATCTATCAGCAACAAATTCAATATATTGAGACATAAGTCTTGAATTCA 1448140 Query 49838 TTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCAT 49897 |||| || | | | ||| | || || || |||| | || | || || | Sbjct 1448139 TTCCAATTAAATCACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTT 1448080 Query 49898 CTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGC---AATAAATGTTTAAACA 49954 || | | ||| | ||| |||||| | || |||||| || | | Sbjct 1448079 CTTTAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAA 1448023 Query 49955 TCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACG 50014 | || || ||||| || ||||| || ||||| ||||||| ||| || ||| | Sbjct 1448022 TTAAGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATG 1447963 Query 50015 TGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGA 50072 | | || | | | | ||||||| |||||| || | | |||| || ||| Sbjct 1447962 TTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTG-CACAAAA-ACTTCCACT 1447905 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTC 50132 ||| || || |||||||| ||| || |||| ||| || || || | || Sbjct 1447904 AAATAATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTATC 1447845 Query 50133 ATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGC 50192 || ||||| || |||||| || || ||||||| || || |||| || || Sbjct 1447844 ATTAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGC 1447785 Query 50193 ATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATA 50252 || || | || |||| || |||||||| |||| ||||||| || | |||||| Sbjct 1447784 ATGGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATA 1447725 Query 50253 CATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGT 50312 |||| ||||| || ||||||| || || ||||| || || | | || || | Sbjct 1447724 TGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAAT 1447665 Query 50313 AATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGC 50372 || | |||||| | ||||| ||| |||||||| |||||||| ||||| || Sbjct 1447664 TATTTCTACTTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGC 1447605 Query 50373 TGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCA 50432 ||||||||| || || ||||||||||||||||||||||| || ||| ||| | | Sbjct 1447604 TGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAA 1447545 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| || | ||| | |||| ||| | |||||| ||||||||||||| || || || || Sbjct 1447544 ATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTT 1447485 Query 50493 TTTATACATATTCCAGATGTCATGATAT 50520 ||| || | |||||| | ||| ||||| Sbjct 1447484 TTTGTAAAAATTCCAAACTTCAGGATAT 1447457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718264508343920