Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq2 250 2e-61 >seq2 Length=1580255 Score = 250 bits (276), Expect = 2e-61 Identities = 656/983 (67%), Gaps = 31/983 (3%) Strand=Plus/Minus Query 13476 AACaaaaaaaGTTGTTATTTATT--CAACTTTATA-ATATTCAATAAAAACT-AAAAATC 13531 ||||||||| || | |||| || ||||||| | ||||| ||| || ||||||| Sbjct 1448413 AACAAAAAA--TTATAATTTTTTATCAACTTTTTTTATATT--ATATTTTCTTAAAAATC 1448358 Query 13532 AACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGATATTC 13591 | || || ||||| || | || | | | | || ||||| || |||||||| || Sbjct 1448357 AGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTTTGATAATC 1448298 Query 13592 ACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATC 13651 |||||||||||||||||| || ||||| |||| | ||||| ||||| ||| Sbjct 1448297 TGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCCATCCAATT 1448238 Query 13652 AAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGC 13711 |||||||||| | || ||| |||||| ||| |||| | ||||||||||||||| Sbjct 1448237 AAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAATCTATCAGC 1448178 Query 13712 AATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTTTACAGGAA 13770 || ||| ||||||||||||||||| || || ||||||| || |||| | ||| | Sbjct 1448177 AACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC-ACATGGT 1448120 Query 13771 TTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAATA 13829 | ||| || |||| | | |||| || || ||||| | ||| || || | Sbjct 1448119 AAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATATTTTGAACA 1448060 Query 13830 ATCTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAAATCACAAT 13887 | || | | | | |||||| | || ||||||| || ||||||| || Sbjct 1448059 ACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAAATTAAGCAATTAAAATCAGTAT 1448002 Query 13888 GAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCATCAATCCT 13946 | || || |||||||| ||||| | ||| || ||||||||| || || || || | Sbjct 1448001 GTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTTT 1447942 Query 13947 CGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCA 14006 ||||||| |||||||| |||||| ||| || ||| ||||| || || || Sbjct 1447941 -GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATACCTTCTACACAT 1447883 Query 14007 GCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--ATCCATTTTCTAG 14064 ||| || | | || ||| |||| || ||||| || |||||||| || Sbjct 1447882 GCATTAGCCACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTAATCCATTTAGCAG 1447828 Query 14065 CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCT 14124 ||||| | ||| ||||| || || |||||||||||| ||||||| | | Sbjct 1447827 CCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAATAAATTTAACC 1447768 Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 | ||||| | | ||| || |||| || | ||| ||||| ||||||| ||||| | Sbjct 1447767 TTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTCAGAATGTATAT 1447708 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGT 14244 |||| | |||||| |||||| |||||| | | ||||| || |||||| Sbjct 1447707 TTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCTACTTCTCTTA 1447648 Query 14245 AAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATA 14304 ||||| | ||||||||||| ||||| |||||||| |||||||||||||| || | Sbjct 1447647 AAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAAAAAATGCTAAAA 1447588 Query 14305 TGTTTTTAATAAAGTATTGCTCTTCATT---GTTGAGTTTTTTCCAATCGGATAAATCCT 14361 | ||| |||| | || | |||||| || | ||||| |||| ||||| Sbjct 1447587 CATGTTTTATAA---AATGTTTTTCATTTACATTTAATTTTTCAAAATCTTTCAAATCAC 1447531 Query 14362 TAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACATTACCC 14421 | || | ||| | ||| ||| |||||||||| ||| |||||||||| || | || Sbjct 1447530 TTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCC 1447471 Query 14422 ATATTTCTTTATATAATATAGGA 14444 | | ||| ||||| |||||| Sbjct 1447470 AAACTTCAGGATATATAATAGGA 1447448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479725133625200