Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=1580255 Score = 221 bits (244), Expect = 1e-52 Identities = 617/932 (66%), Gaps = 25/932 (3%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 ||||||||| || || ||||| || | || | | | | || ||||| || ||| Sbjct 1448365 TAAAAATCAGTATTCAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGACTTT 1448306 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || ||||||||||||||| || || ||||| |||| | ||||| ||| Sbjct 1448305 TGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAATCC 1448246 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || ||| ||||||||| | || ||| |||||| ||| |||| | || |||| Sbjct 1448245 ATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCTAGTAAT 1448186 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 13550 |||||||||| ||| ||||||||||||||||| || || ||||||| || |||| | Sbjct 1448185 CTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 1448127 Query 13551 TACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| || |||| | | |||| || || || || | ||| Sbjct 1448126 -ACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTTTAACTATAT 1448068 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTT--TAAAAATTAAACACGCAAA 13667 | | || || || | | | | |||||| | || ||||||| || ||| Sbjct 1448067 TTTGAACAACTTCTTCTG--GTAATTTATTTTCTAATAAACTATAAATTAAGCAATTAAA 1448010 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGCA 13726 |||| ||| || || |||||||| ||||| | ||| || ||||||||| || || | Sbjct 1448009 ATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAA 1447950 Query 13727 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 13786 | || | ||||||| |||||||| |||||| || ||| ||| ||||| || | Sbjct 1447949 TTTATTTT-GTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATACCTT 1447891 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCCA 13844 | || ||| || | | || ||| |||| || ||||| | || ||||| Sbjct 1447890 CTACACATGCATTAGCCACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTAATCCA 1447836 Query 13845 TTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA 13904 ||| ||||||| | ||| ||||| || || |||| || |||| |||||| Sbjct 1447835 TTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAATAA 1447776 Query 13905 ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGA 13964 || | | | ||||| | | ||| || |||| || | ||| ||||| ||||||| Sbjct 1447775 ATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTCAGA 1447716 Query 13965 GTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTAC 14024 ||||| ||||| | |||||| |||||| |||||| | | ||||| || ||| Sbjct 1447715 ATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCTAC 1447656 Query 14025 CTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 || ||||| || || ||||| ||||| || || |||||||| |||||||||| Sbjct 1447655 TTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAAAAA 1447597 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATT---GTTGAGTTTTTTCCAATCGG 14140 |||| || | | ||| |||| | || | |||||| || | ||||| |||| Sbjct 1447596 ATGCTAAAACATGTTTTATAA---AATGTTTTTCATTTACATTTAATTTTTCAAAATCTT 1447540 Query 14141 CTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTAT 14200 ||||| | || | ||| | ||| ||| |||||||||| ||| |||||||||| | Sbjct 1447539 TCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGT 1447480 Query 14201 ACATTACCCATATTTCTTTATATAATATAGGA 14232 | | ||| | ||| ||||| |||||| Sbjct 1447479 AAAAATTCCAAACTTCAGGATATATAATAGGA 1447448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585940431920