Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 434 1e-116 seq2 174 2e-38 >seq11 Length=923120 Score = 434 bits (480), Expect = 1e-116 Identities = 1123/1694 (66%), Gaps = 30/1694 (2%) Strand=Plus/Minus Query 70942 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 71001 ||||| |||||| | |||| ||| || ||||| | || || ||||||| |||||| Sbjct 449575 TGATCAATGAAGACACCCCGGTCAGCGGCCATGTCAATAATATTCTTTTGCTTGATTTCC 449516 Query 71002 CAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGGTTTGTATTCTGAATGGA---- 71057 |||| ||||||||| | | || | || | || | | || | | | |||| Sbjct 449515 CAAACAGTTTTATACAATTCTTTCAAGTCGTTAGGTATTTCGCTAATAT-ATTGGACACT 449457 Query 71058 TCCACCATCTGCAAT-AATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTA 71116 |||| | ||||| ||| | | ||| || ||||||| ||| || ||| || | Sbjct 449456 TCCATTGTGAGCAATTAATTGT-TGTTTCATATCTTCATCCCACAAACCTCTATCAAAAA 449398 Query 71117 AAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGT 71176 | || | | | ||||||||| || || ||||| ||| ||||| | | | || Sbjct 449397 GATCTTTTAACAAATGAGGATTTACAACAAAGAATTCACCACTTAATACACGTCTATAGT 449338 Query 71177 AAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATG 71236 |||| ||||| ||||| ||||| | || |||||||||||||||||||| | |||||| | Sbjct 449337 AAATGTTACTTGTATATGGTTCAAAAGATTCATTATTTCCCAAAATTTGTGAAGTTGAAG 449278 Query 71237 CAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTT 71296 | || ||||||||||| | | || |||||| | |||||| | ||||| | || Sbjct 449277 CTGTTGGCATAGGTGCTAAAAGAAGTGAATTTCTTAATCCATGTATGCTTATTTTTTTTT 449218 Query 71297 TTAGAGATTCCCAATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNNN 71352 ||| | ||||||| |||| | | || ||| | Sbjct 449217 TTAATAAATCCCAATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGT 449159 Query 71353 NNNATGCCGTTACTAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGC 71411 || || | || || | | | ||| ||||| || ||||| || | | || || Sbjct 449158 AATATTCCTTGGCTTGCTGGACTACCCTT-ATATGATTCATATGGACCATGTACTTGTGC 449100 Query 71412 TAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAG 71471 || |||| | | ||||| || ||||||| || || || || || | ||||| | Sbjct 449099 TAATTCAACAGACATTTCTAAAGCCGCATAATACATTGTCTCAAATATTCTTTTATTTAA 449040 Query 71472 ATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCC 71531 |||| ||||| ||| ||||||| |||| || ||||| | ||||||||||| Sbjct 449039 TTCTTTAGCTTCGTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCC 448980 Query 71532 TTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGG 71591 ||| || || || || ||||||| || || ||||| || ||||||||||| ||| || Sbjct 448979 TTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTTTTCAGCTTCTTTAATTGG 448920 Query 71592 ATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCT 71650 |||||||| | || |||||||||| | |||||| | || || ||| | | ||| | Sbjct 448919 GTAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCAT 448861 Query 71651 TTAGTTTGAGAAAATCAAA-TCTCCCATCTAT-TACAAACACGTT----CAAGGCAACAG 71704 || ||| ||||| ||| ||| | | | || |||| || || |||| | Sbjct 448860 ATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTG 448801 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | |||| ||||||||| ||||| |||| || || |||| || |||||| || | Sbjct 448800 AAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATTCAATTATTTCACAACATA 448741 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 |||||||| || || ||||||||||||| ||||||| || || || ||||| | Sbjct 448740 AGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATTTAGAATTGCATGCATCTT 448681 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGA 71884 |||| | ||| | || |||||||||||| ||| || || || || ||| | Sbjct 448680 TATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTAATATAGCAAACCATAAAT 448621 Query 71885 CTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTT 71944 || | || | | | || || | |||||| ||| |||| ||||||||| || Sbjct 448620 CTTGTGCAAGGACTGTTTTTTTTCCTAAATTTTCTTCTTCATATTTTGTATATAACTTTT 448561 Query 71945 CGAACTCGTCTCCCCAAGCATTGTC-TAATCCAGGACATTCATTCGGACACATCAATGAC 72003 | || ||||||||||||| ||| | ||| || ||||||||||| |||||||| || | | Sbjct 448560 CAAATTCGTCTCCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTC 448502 Query 72004 CACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 72063 || | | || || ||||||| ||||||||| | |||||| | ||||| ||| |||| Sbjct 448501 CAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAAT 448442 Query 72064 AGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 72123 | ||||| | ||| || || || || ||| ||| | | ||| | || | | | Sbjct 448441 AAATCTCGAGCTCTTAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAA 448382 Query 72124 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCC 72183 ||||| |||||||| || || | |||| || | | ||| | ||| ||| || Sbjct 448381 ATATCTGAATGCCATGGCTCTATATATACTGCAAAAGATCCTTTTCTTTTCCCTCCACCT 448322 Query 72184 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 72243 ||||||| || || || || | |||| |||| || |||||||||| | |||||| ||| Sbjct 448321 TGATCTACATACCTTGCCGTATCATTAAAAACCCTTAACATTGGAACTAAACCATTTGAT 448262 Query 72244 GCACCATTGGTCCCGGAGATAT-AGCTTCCACTG-GCACGAATATTGCTAATTGATAGAC 72301 |||||| || || |||| || | ||| | | |||| | | | | Sbjct 448261 ATACCATTAGTTCCTCTAATATAAGAAT--TCTGACCTCTTATATCTTGTACAGCAACTC 448204 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 |||| || ||||| ||||| || || || ||| ||||||| || ||| | || || | Sbjct 448203 CTATGCCGCCTGCTGTTTTACTAATCAAAGCACATTGTTTTAATGTTTCAAATATACCTT 448144 Query 72362 CTATACTATCATCCATCAT-GTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 | ||| ||| |||| | ||| ||||||||| |||||||| | || ||| Sbjct 448143 CAATAGAATCTGATTTCATAGATAA-TAGAAAACAAGATGACATTTGCGGTCGTGGGGTT 448085 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | ||||||||| || || | ||| || || || |||||| ||||| || || || Sbjct 448084 CCTGAATTAAATAATGTGGGTGTAGCATGTGTGAAATATTTTTGAGACATTAAATGATAT 448025 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || || | |||| ||| | ||| | ||| ||||| | | || | |||||| | | Sbjct 448024 GTTTCTAAAGCTTTTTCAAGATCATCTATATGAATTCCAATTGACACTCTCATTAATAAA 447965 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 || ||||| | ||||| || || ||||| ||| || || || ||| ||| |||||| Sbjct 447964 TGTTGAGGACGTTCAATAATTTTATTATTAATTCGTAATAAATATGATCGTTCTAAAGTT 447905 Query 72601 TTAAAACCAAAATA 72614 ||||| |||||||| Sbjct 447904 TTAAATCCAAAATA 447891 >seq2 Length=1580255 Score = 174 bits (192), Expect = 2e-38 Identities = 383/574 (67%), Gaps = 0/574 (0%) Strand=Plus/Minus Query 42080 TGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 42139 || ||||| |||||||| ||||||||||| || ||| || | || | | | Sbjct 1448002 TGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1447943 Query 42140 CGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCC 42199 | ||||||| |||||| || | ||| |||| ||| || || |||||||| Sbjct 1447942 TGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATAATATACCTTCTACACAT 1447883 Query 42200 GCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTTTGAGCCCAA 42259 ||| || | || ||| || || || | |||| ||||| || |||||| Sbjct 1447882 GCATTAGCCACAATTCTTTCAGCAAAAGAATTTGTATCATTAATCCATTTAGCAGCCCAT 1447823 Query 42260 TCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCA 42319 || || ||||||| || || |||| || |||| || | || |||| Sbjct 1447822 AATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGGAATAAATTTAACCTTTCT 1447763 Query 42320 TTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCA 42379 || |||||||| ||| ||||||| || | |||||| |||| ||||| || |||||| Sbjct 1447762 TTTTCATCTTTAATATAATTATCGATTAATAAACTATATGTTTCAGAATGTATATTTTCA 1447703 Query 42380 ATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAAT 42439 | || || ||||| || || | | || || | | | ||||||| | ||||| Sbjct 1447702 ACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATTATTTCTACTTCTCTTAAAAAT 1447643 Query 42440 CGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGT 42499 ||| |||||||| |||||||| ||||| ||||||||||| || || |||||| Sbjct 1447642 TTACTAGCCAAATTTTCTAATACTATTCCATCACTTGCTGCAAAAAATGCTAAAACATGT 1447583 Query 42500 TTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATA 42559 |||||||||| |||||| | ||||||| | |||| || | ||| | |||| | Sbjct 1447582 TTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAATCTTTCAAATCACTTGATAAA 1447523 Query 42560 TCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCA 42619 || | |||||| | ||||||||||| ||||| || ||||| || | |||||| | ||| Sbjct 1447522 TCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTTTTTGTAAAAATTCCAAACTTCA 1447463 Query 42620 TGATATTGAATTGGGAAAATAACAAATCTATTTG 42653 ||||| ||| || | ||||||||||| Sbjct 1447462 GGATATATAATAGGATGCAATGTAAATCTATTTG 1447429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135189943280