Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq11 114 1e-20 seq3 102 8e-17 >seq11 Length=923120 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||| ||||| | || ||||||||||| || || ||||| Sbjct 406498 CCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406439 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || | | ||| ||||| || || Sbjct 406438 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406379 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | ||| | || || | ||||| || Sbjct 406378 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACA 406319 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || ||||||||||| || || |||||| Sbjct 406318 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 406271 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||||| ||||| | || ||||||||||| || || ||||| Sbjct 406270 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 406211 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || | | ||| ||||| || || Sbjct 406210 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 406151 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | ||| | || || | ||||| || Sbjct 406150 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACA 406091 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | || || || || ||||||||||| || || |||||| Sbjct 406090 TCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCATA 406043 Score = 82.4 bits (90), Expect = 8e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||||| ||||| | || ||||||||||| || || ||||| Sbjct 406042 CCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGAT 405983 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || | | ||| ||||| || || Sbjct 405982 AATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGA 405923 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | ||| | || || | ||||| || Sbjct 405922 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGACA 405863 Query 143138 TCAACAGT 143145 |||| ||| Sbjct 405862 TCAAGAGT 405855 Score = 82.4 bits (90), Expect = 8e-11 Identities = 461/728 (63%), Gaps = 25/728 (3%) Strand=Plus/Minus Query 156871 AAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAttt 156930 ||||| ||| || || ||||| | || || || || || ||||| | |||| ||||| Sbjct 448997 AAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCGATGCCTTTTATTTGATTT 448938 Query 156931 ttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTAC 156990 || || || ||| ||||| |||| | ||||||||||||| ||| | || | || Sbjct 448937 TTCAGCTTCTTTAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATT-TCTAGTAA 448879 Query 156991 ATGTTTGACCACAGTG-TGCAATAGTTGAAAATCAAAAG------TATCATTATTGATAT 157043 ||| | | | | ||| || ||||| ||| | || ||| | | Sbjct 448878 TAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAA 448819 Query 157044 ATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATT 157103 ||||| | ||||| || || | |||||| || || ||| || || | | |||| Sbjct 448818 ATTTACATAATGCAATTGAAGCCAAATTACAAACAGCTACTTCATCAGGTGAGGTGTATT 448759 Query 157104 GTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTT 157163 | |||||| ||| || || || ||||| || ||| |||| ||||||| || Sbjct 448758 CAATTATTTCACAACATAAGTTACTACATTTAATTGTTCCTAAATTTTTTTGATTAGATT 448699 Query 157164 TGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTA 157223 | ||||| || || || |||||||| || ||| || ||||| |||| ||| || Sbjct 448698 TAGAATTGCATGCATCTTTATATAACATATATGGTACACCAGTTTCAATTTGACTTTGTA 448639 Query 157224 TGATGTTGCG---CATTAATGTAAC-CGCGGGCA--TTTGCTCGCGAAACTGGCCTTTAT 157277 || | || ||| ||| | | || | ||| | | ||| | || | Sbjct 448638 --ATATAGCAAACCATAAATCTTGTGCAAGGACTGTTTTTTTTCCTAAATT----TTCTT 448585 Query 157278 CCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG-TTGAGCTTAGGA 157336 | || || | | | || | | |||||| || || || | | || || | | | ||| Sbjct 448584 CTTCATATTTTGTATATAACTTTTCAAATTCGTCTCCCCAAGATTCACTTAAACCT-GGA 448526 Query 157337 CACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAATATA 157396 || || |||||||||||||| | ||| | ||||||| || | ||||||||||| | Sbjct 448525 CATTCATTAGGACACATTAAAGTCCAGTTTTTATTTTCTTTTACTCTTTTCATAAATAAA 448466 Query 157397 TCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATGTTT 157456 || || ||||| | ||| | | ||||| || ||| | ||||| | ||| ||| Sbjct 448465 TCAGGTACCCAAATAGCATAAAATAAATCTCGAGCTCTTAATTCTTCTTTACCATGATTT 448406 Query 157457 CGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCTTGG 157516 | | | ||||| || | ||| || ||||||| || || | || ||||| Sbjct 448405 TTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGCTCTATATATACTGCAAAA 448346 Query 157517 GCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACTCGC 157573 | |||||||| || ||||||||||| || | | || ||| ||||||||| | Sbjct 448345 GATCCTTTTCTTTTCCCTCCACCTTGATCTACATACCTTGCCGTATCATTAAAAACCCTT 448286 Query 157574 AGCATTGG 157581 | |||||| Sbjct 448285 AACATTGG 448278 >seq3 Length=1724855 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || ||||||||||| || || ||||| | || || ||||| Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGCCATCTTCT 1545429 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| |||||| | || || | ||| || || || || || |||||||| || | Sbjct 1545430 AATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTGA 1545489 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1545490 ATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTTT 1545549 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||| || |||||||| Sbjct 1545550 CCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507011370588960