Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq11 156 3e-33 seq3 132 3e-26 >seq11 Length=923120 Score = 156 bits (172), Expect = 3e-33 Identities = 182/245 (74%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 43880 ATATCCAATCAT---CAACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTT 43936 ||||| ||| || ||||||||||| |||||||| |||||||||| || |||||| Sbjct 406516 ATATCGAATGATTAGCAACCTCCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTT 406457 Query 43937 TGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAAC 43996 |||||||||||||| |||| | |||| || ||||||||||| ||||| || || Sbjct 406456 TGAATATTATAATCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAAT 406397 Query 43997 CGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACA 44056 | ||| || || | || | ||||||||||||| ||||||| ||| || | ||| | Sbjct 406396 CTTTGTTGATCAGGGGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATA 406337 Query 44057 GTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATT 44116 ||||| | || || ||||| | || || ||||| || ||||| || || ||||| || Sbjct 406336 GTATCGGATGGTTCGACATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATC 406277 Query 44117 TGCAT 44121 ||||| Sbjct 406276 TGCAT 406272 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| |||||||||| || |||||||||||||||||||| Sbjct 406271 ACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 406212 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| || ||||||||||| ||||| || || | ||| || || | || Sbjct 406211 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 406152 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||||| ||| || | ||| |||||| | || || || Sbjct 406151 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 406092 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| | || || ||||| || ||||| || || ||||| || ||||| Sbjct 406091 ATCAAGAGTTATGGTTTTTCCAGTTAATGTTTTTACAAAAATCTGCAT 406044 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| |||||||| |||||||||| || |||||||||||||||||||| Sbjct 406043 ACCACCTCTTAATCTTAAAACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGA 405984 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 |||| | |||| || ||||||||||| ||||| || || | ||| || || | || Sbjct 405983 TAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGG 405924 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||||||| ||||||| ||| || | ||| |||||| | || || || Sbjct 405923 AATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCGAC 405864 Query 44074 ATCGACCGTAATTGTTTTACC 44094 ||| | || || ||||| || Sbjct 405863 ATCAAGAGTTATAGTTTTTCC 405843 >seq3 Length=1724855 Score = 132 bits (146), Expect = 3e-26 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATC-GTTTAATTGACGCTCATCGTC 43971 |||||||||| || |||||||||||||||||||| | | || | || |||| || Sbjct 1545370 ACCAAATGTAAGGTTGATTCTTTTTGAATATTATAATCAGATAAAGTTCTGC-CATCTTC 1545428 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||||||||| ||||| || | | ||| ||||| | || | |||||||||||| Sbjct 1545429 TAATTGTTTTCCAGCAAAAATTAGTCTTTGTTGGTCAGGGGGAATTCCTTCTTTATCTTG 1545488 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| ||| || | ||| |||||| | || || ||||| | || |||||||| Sbjct 1545489 AATTTTTGCTTTAACATTTTCAATAGTATCGGATGGTTCAACATCAAGAGTGATTGTTTT 1545548 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 |||||||| || || ||||| |||||||| Sbjct 1545549 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1545578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354775533198744