Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20berghei_20[genbank_20GCA_5F900044335.1_202016-02-18] 478 sequences; 18,811,223 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 221 1e-52 >seq2 Length=1580255 Score = 221 bits (244), Expect = 1e-52 Identities = 603/906 (67%), Gaps = 33/906 (4%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACA---GAC 12856 |||||||||| ||| | ||||||||| | || | || ||||| ||||||| ||| Sbjct 1448366 TTAAAAATCAGTATTCAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAC 1448309 Query 12857 ATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATA 12916 |||||||| || ||||||||||||||| || ||||||||||||| ||| || || Sbjct 1448308 ---TTTTGATAATCTGCAACTCTTTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATT 1448252 Query 12917 TTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAA---TTCT 12973 ||||| ||| || |||||||| ||| | | ||| ||||||||| |||| Sbjct 1448251 AAATCCATCCAATTAAATGGATTTTTAGAATGAAAAACTTTAGAACACCCTAAACATTCT 1448192 Query 12974 AGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCC 13032 ||||| ||| ||||||||||| || || || || ||| || || | |||||||| Sbjct 1448191 AGTAA---TCTATCAGCAACAAATTCAATATATTGAGACAT-AAGTCTTGAATTCATTCC 1448136 Query 13033 TATTAATTTTACA-GGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGA 13091 ||||| | ||| || | || ||| | ||| | | |||| ||||||||||| Sbjct 1448135 AATTAAATC-ACATGGTAAAGATTCACAAATAAATGATCTCTCTACTTCAACTGCTTCTT 1448077 Query 13092 TAACTATGTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCA 13148 ||||||| | | | || | ||| ||| | | | ||| | || | || | Sbjct 1448076 TAACTATATTTTGAACAACTTCTTCTGGTAATTTATTTTCTAATAAAC---TATAAATTA 1448020 Query 13149 TACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTA 13208 || ||||||| || | ||||||||||| || |||| || || |||||||| Sbjct 1448019 AGCAATTAAAATCAGTATGTAGACCTTCATCTCTGCTAATTAATTCATTACTAAATGTTA 1447960 Query 13209 GACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaa 13268 ||| | | | ||||||||| |||||| || ||| ||| || ||| | Sbjct 1447959 AACCATGTAATTTATTTTGTTTTTTAAACCAAAAAATTGCACAAAAACTTCCACTAAATA 1447900 Query 13269 aTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCT 13328 |||| ||||| || |||| || | | |||||| || | | |||| || | Sbjct 1447899 ATATACCTTCTACACATGCATTAGCCACAATTCTTTCAGCAAA---AGAATTTGTATCAT 1447843 Query 13329 CTATCCACTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCG 13387 ||||| || ||||| |||||| || |||| || | | |||||||| || || Sbjct 1447842 TAATCCATTTAGCAGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCA 1447784 Query 13388 TTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATAC 13447 | ||||||| |||| || ||| ||||||| |||| || ||||| ||||| Sbjct 1447783 TGGAATAAATTTAACCTTTCTTTTTCATCTTTAATATAATTATCGATTAATAAACTATAT 1447724 Query 13448 ATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGAT 13507 |||| ||||| |||||||| | |||||||| ||| |||||| | | || || | Sbjct 1447723 GTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTTGCTTCAATT 1447664 Query 13508 ACCTGAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGC 13566 | | ||||| ||||| || || || || ||||| ||||| || ||||| || Sbjct 1447663 ATTTCTACTTC-TCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTTGC 1447605 Query 13567 AGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCA 13626 |||||||| || | | || || ||||| | |||||| ||| | || ||| | Sbjct 1447604 TGCAAAAAATGCTAAAACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAA 1447545 Query 13627 ATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTT 13686 |||| ||||| |||||||||| | || ||| | |||||||| ||||| |||| || Sbjct 1447544 ATCTTTCAAATCACTTGATAAATCAATTTCTTCAGCTGTCCAAAATGAAGCTTCAGCTTT 1447485 Query 13687 CTTATA 13692 || || Sbjct 1447484 TTTGTA 1447479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430979889258156